Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001659.2 Length=170101 Score E Sequences producing significant alignments: (Bits) Value seq3351 91.5 2e-13 seq3454 87.8 2e-12 >seq3351 Length=4722 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 98276 ATGAACACGTTTTACGGCGAGGCAGGTAACAATTTGTCGCCCTTCTTTCTGCTTCCTCTA 98335 ||||| || ||||| |||||||||||||||| | || || |||||||| | | || Sbjct 2367 ATGAATACATTTTATGGCGAGGCAGGTAACAGTAATTCCCCATTCTTTCTTCGTGAATTA 2426 Query 98336 GCCGGAGGAGTCAC--CAGTTCGGGTCAATATAATCTTAAACTCGTCTATAACTTTGTTA 98393 || |||||| | || ||| | || ||||| ||| || | || || ||| || |||| Sbjct 2427 GCTGGAGGAATTACTTCAG--CAGGACAATACAATATTGATCTTGTTGCTAAATTCGTTA 2484 Query 98394 TCAATAAAGGTTACGGCATCAAGTACGGTGACACCGACTCATTATACATTACATGCCCAG 98453 ||||| | || |||||||| |||||||| ||||| ||||| |||| | ||| | Sbjct 2485 CAGCGAAAGGATTTGGGATCAAGTATGGTGACACTGACTCTTTATATCTTACCTACCCGG 2544 Query 98454 A 98454 | Sbjct 2545 A 2545 >seq3454 Length=7193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 98261 GCGTTGAAAATTTTCATGAACACGTTTTACGGCGAGGCAGGTAACAATTTGTCGCCCTTC 98320 || ||||| | | |||||| || ||||| || ||||||| || | | || || ||| Sbjct 2695 GCTTTGAAGGTATACATGAATACTTTTTATGGGGAGGCAGAAAATAGCATATCCCCATTC 2754 Query 98321 TTTCTGCTTCCTCTAGCCGGAGGAGTCACCAGTTCGGGTCAATATAATCTTAAACTCGTC 98380 ||||| | |||| ||||| |||| | || ||||||||||| || || ||| Sbjct 2755 TTTCTTTGTGAATTAGCTGGAGGGATCACTTCTGCGAGTCAATATAATATTGGTCTTGTC 2814 Query 98381 TATAACTTTGTTATC-AATAAAGGTTACGGCATCAAGTACGGTGACACCGACTCATTATA 98439 ||| || | |||| | ||||||| | | || || || ||||| ||||| || ||||| Sbjct 2815 GCTAAATTCG-TATCTGAAAAAGGTTTCAGAATAAAATATGGTGATACCGATTCTTTATA 2873 Query 98440 CATTACATGCCCAGATA 98456 | | || |||||||||| Sbjct 2874 CCTCACCTGCCCAGATA 2890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544122175806600