Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq202 93.3 3e-14 seq498 87.8 1e-12 seq865 84.2 2e-11 >seq202 Length=70977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| ||||| ||| || || | Sbjct 31066 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 31125 Query 25095 GAGACGGTGGC-CGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||||||| | || ||||| |||||| | ||| |||||| Sbjct 31126 GATACCATAGATCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATCCCCCCAGATCA 31184 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || ||||||||||||||| | ||| | | || || || Sbjct 31185 ACAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAA 31244 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | || | || ||| |||| || Sbjct 31245 TATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGG 31292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| |||||| ||| || || | Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || ||||| |||||| | || |||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATTCCTCCAGATCA 31412 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | ||||| || || ||||||||||||||| ||| | | ||||| || Sbjct 31413 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 31472 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||||||||| || Sbjct 31473 TATTCAAAAAGAATCTACTCTCCA 31496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| |||| || ||||| || || ||| || || | Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || |||||||||||| | ||| |||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAAGAAGGTATCCCCCCAGATCA 30728 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || |||||||| |||||| || || | || || || Sbjct 30729 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 30788 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||| || | || | || ||| |||| || Sbjct 30789 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 30836 >seq498 Length=39471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| || | |||||| | || || ||||||||||| ||| ||| Sbjct 34659 TAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAA 34718 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || || | | | |||| |||||||| ||||||||||| | ||| | Sbjct 34719 GTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGG 34778 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGA 25207 |||||||| | | || ||||| || ||||| || |||||| | ||| | |||| Sbjct 34779 ATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGA 34836 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | ||| |||| | || ||||| || || Sbjct 34837 TTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 34890 >seq865 Length=39574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || || ||||| ||||| ||| || || || Sbjct 9963 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 10022 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | |||| || | || || |||||||| | ||| ||||| Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGA-TTCAAGACAAAGAAGGCATTCCCCCGGATCA 10081 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| || ||||||||||||||| || || | |||||||| Sbjct 10082 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 10141 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| || ||||| || | ||| | || ||| |||| || Sbjct 10142 TATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410743054299290