Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2141 125 7e-24 >seq2141 Length=12878 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| ||||||||||||||| | ||||| || || | Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAA-----ATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | | | || |||| ||||| |||| || || ||||| |||||| | | Sbjct 5192 GATACCAT-----CGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAG 5246 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| ||||| | ||| || ||||| || || || | || ||||| ||||| Sbjct 5247 ACCAGCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACT 5306 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || || || |||| || ||||| || Sbjct 5307 ACAATATTCAAAAAGAATCCACTCTTCATCTCGT 5340 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || |||||| | || || ||| | || Sbjct 4904 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 4963 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | || | |||||||| |||||||| || || ||| | |||||| Sbjct 4964 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 5023 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| |||||||| || || |||| || ||||| || || ||| Sbjct 5024 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 5083 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || ||| | || || |||||||| Sbjct 5084 ATTCAAAAAGAGTCAACTCTTCATCTAGT 5112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515150064023600