Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq498 123 4e-23 seq202 107 3e-18 seq2141 96.9 5e-15 seq446 96.9 5e-15 seq6 93.3 6e-14 seq1187 91.5 2e-13 seq865 89.7 8e-13 >seq498 Length=39471 Score = 123 bits (136), Expect = 4e-23 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||| || |||||||| ||||| ||||| ||||| | | | ||| || Sbjct 34873 TACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTC 34814 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| || || | ||| |||||||| || ||||||||||||||||| Sbjct 34813 TAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTG 34754 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| |||||| ||||||| || || ||||| Sbjct 34753 AATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTT 34694 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATAT-TTGTTaaaaaaaa 146306 ||| || | |||||||| || |||||||| | ||| |||||| | ||| ||||||| Sbjct 34693 ACCAGTAAGTGTTTTAACAAAAATTTGCATGT--TTAAAAAAATTTATTGGGGAAAAAAA 34636 Query 146307 TAATT 146311 | ||| Sbjct 34635 TTATT 34631 >seq202 Length=70977 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| | |||||||||||| ||||||||||| || Sbjct 31520 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 31461 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || ||||| | ||||||||| |||||| Sbjct 31460 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 31401 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 31400 ATACCTTCCTTATCTTG 31384 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 30608 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 30549 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || || || | ||| ||||| |||||| Sbjct 30548 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 30489 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 30488 ATTCCTTCCTTATCTTG 30472 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| ||||| Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 30944 ATACCTTCTTTATCTTG 30928 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| || || Sbjct 30776 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 30717 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || |||||| Sbjct 30716 ATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACT 30657 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||||||||| || | ||||||| ||| |||||||| Sbjct 30656 TCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 >seq2141 Length=12878 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| || |||||||| |||||||| | | ||| || ||||| || || Sbjct 5785 AGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACC 5726 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| | ||||||||| ||||| || || ||||||||||| Sbjct 5725 AGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTG 5678 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||| | ||| | ||| || ||||| || |||||||||||| Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 5071 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || | |||||| ||||| ||||| | | |||||| || || ||| Sbjct 5070 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 5011 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||| || ||| ||| ||| Sbjct 5010 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 4951 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| || || || | ||||||| ||| |||||||| Sbjct 4950 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 >seq446 Length=157017 Score = 96.9 bits (106), Expect = 5e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTT-TAGATATATTATAATCTGA 146109 ||||| | ||||| | ||| | ||| || ||||| |||| | || |||||| ||||||| Sbjct 26274 CCACCACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGA-ATATTACAATCTGA 26216 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | | ||| || ||||| || ||||||||||| | | |||||| || ||||| Sbjct 26215 TAAAGTTTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGG 26156 Query 146170 AATTCCTTCTTT 146181 ||| |||||||| Sbjct 26155 AATGCCTTCTTT 26144 >seq6 Length=229349 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | ||||||||| ||||||| || || || | ||||||| ||||| Sbjct 13959 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCAACACATATATTGTAATCACTT 14018 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 14019 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 14078 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 14079 ATACCTTCTTTTTC 14092 >seq1187 Length=25818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||| Sbjct 11953 CCACCTCTTAATCTTAATACTAAATGTACAGTAGATTCATGTTGTATATTATAATCTTCT 12012 Query 146111 AGAGTTCTGCTATCATCT---AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||| ||||||| | |||||| || || | || ||| | ||| ||||| ||| Sbjct 12013 AAAG---TGCGATCATCTTCAAGTTGTTTACCGGCCATAAGCAAACGTTGTTGATCTGGA 12069 Query 146168 GGAATTCCTTCT 146179 || || |||||| Sbjct 12070 GGTATACCTTCT 12081 >seq865 Length=39574 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/182 (68%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| |||||||| | || | | ||| || |||||||| || ||||| ||||| | | Sbjct 10144 ATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGT 10085 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||| ||||| |||||||| ||||| ||| Sbjct 10084 TGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTA 10025 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||||| || || || |||||||| || | || |||| ||| |||||| Sbjct 10024 TCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGC 9965 Query 146276 AT 146277 || Sbjct 9964 AT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743426628051200