Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq148 134 1e-26 >seq148 Length=94477 Score = 134 bits (148), Expect = 1e-26 Identities = 261/382 (68%), Gaps = 9/382 (2%) Strand=Plus/Plus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT---AATGAATT 20456 |||||| || || |||||||||||| | |||||||| || || | ||| || ||| Sbjct 50490 AATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATT 50549 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||| | |||||| |||| |||| | ||||| ||||| || || || ||||| Sbjct 50550 ATCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGC 50609 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 ||| ||||| | | || |||||||||| ||||| || | || | | ||||| || Sbjct 50610 AAGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATT 50669 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 | || ||||| || || | ||||| || | ||||||| | |||||||| || Sbjct 50670 TATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCA 50729 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTC-TTCGCA--TTACTCGAACTGTTAAAGA 20693 | ||| |||||||| ||| | ||| || | | ||| || | |||| | Sbjct 50730 AATCGAACGTGAACCAAAAGCATTTC---CTCGTTTGAAATTTAGACGCAAAATTAATAA 50786 Query 20694 TATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAAT 20753 |||| | ||||||||| |||||||||| | | |||||| | || ||| | ||| Sbjct 50787 TATTGATGATTTTAAATATGATGATTTTATTATTACTGGTTATGAACCTCATCCTCAAAT 50846 Query 20754 TCCAATGGAAATGTCTGTTTAA 20775 |||| |||||||||| ||| Sbjct 50847 CAAAATGAAAATGTCTGTATAA 50868 Score = 132 bits (146), Expect = 4e-26 Identities = 292/431 (68%), Gaps = 14/431 (3%) Strand=Plus/Plus Query 19961 ATGGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGG---AATGC 20017 |||||| ||| | || |||||| |||||||| ||||| ||||| |||||| | || Sbjct 49971 ATGGTGAACATAGAAAAGATCGCACCGGAACAGGAACCTTATCAATATTTGCGCCACCGC 50030 Query 20018 AATCTCGATATAACTTGAGAAATGA-ATTT--CCCTTATTAACTACGAAACGGGTATTTT 20074 | | | | | || | || | |||| || |||||||| || || || || ||| Sbjct 50031 AGTTGGGCTTTTCTTTACGTGATAATATTTTACCTTTATTAACAACTAAGCGCGTTTTTA 50090 Query 20075 GGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGC 20134 | | || | ||||| |||||||||||||||||||| |||||| | | | | Sbjct 50091 CGCGTGCTATTATAGAAGAATTATTATGGTTTATTAAAGGTAATACAAAT---AGCAAAC 50147 Query 20135 TTGTA---GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACA 20191 | || |||||||| || | |||||| || |||| ||| ||| ||| | | Sbjct 50148 ATTTAACCGAAAAAGGTATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATA 50207 Query 20192 GCAATGGATT-TGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGG 20250 | ||| | | ||| | |||| || |||||||||||||| |||||||| |||||| Sbjct 50208 AAATTGGGCTATCACATA-GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGG 50266 Query 20251 AGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGAT 20310 ||||||||||| ||||| || |||| | || |||| ||| |||| || ||| Sbjct 50267 AGACATTTTGGTGCTGAGTACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGAT 50326 Query 20311 CAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTA 20370 ||| | ||| | || || || |||||||| | ||||| || ||| |||| ||| | Sbjct 50327 CAACTGCAAGAGGTCATCGATAAAATTAAAAATACTCCAAATGATAGACGAATCATTCTC 50386 Query 20371 TGCGCCTGGAA 20381 | || ||||| Sbjct 50387 AGTGCTTGGAA 50397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399131773634575