Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1702 342 6e-89 seq717 190 3e-43 seq114 109 7e-19 >seq1702 Length=19207 Score = 342 bits (378), Expect = 6e-89 Identities = 670/984 (68%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA-CACATCAACG 63246 ||| || || || |||||||||| || | |||| |||| ||||| || || ||| Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 63247 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 13578 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 13635 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| ||| | || | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 13636 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 13695 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||| |||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 13696 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 13755 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || || || | ||||||||||| ||||||||||| | ||||| |||||||| || ||| Sbjct 13756 CCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 13815 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGA 63545 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 13816 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 13875 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || ||||| | ||||| || | ||||||| ||| || || |||||||| || Sbjct 13876 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 13935 Query 63606 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||||| |||||| |||| ||||| |||||||| || || | ||| | | || || Sbjct 13936 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 13994 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 13995 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 14054 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 14055 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 14114 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || || || | || ||| ||| |||| || | || ||| |||| | ||| Sbjct 14115 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 14174 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 |||||| |||||||| || ||| | | | || || ||||| || ||||| || || Sbjct 14175 TTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTT 14234 Query 63905 ATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 63964 ||| || || | || |||| || | ||||| || | | ||||||| Sbjct 14235 TTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 14294 Query 63965 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 64024 |||| ||||| | ||| || | | ||| || | || | ||| | |||||| || Sbjct 14295 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 14354 Query 64025 TTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64084 ||| || || ||||| || | || || | || || || | |||||| |||||||||| Sbjct 14355 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 14414 Query 64085 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 || || | || || |||| || |||| | | || ||||| || || | || || Sbjct 14415 AGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACACC 14474 Query 64145 ATTATATATTCCTTGAATAACCTT 64168 | ||| | |||| ||| ||||| Sbjct 14475 TTGATAAACTCCTGAAATGACCTT 14498 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 63108 TCTATAATCGCTTTCCAGAC 63127 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 Score = 104 bits (114), Expect = 3e-17 Identities = 234/353 (66%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 |||||||| | ||| ||||| |||| | || | || |||||| || || ||||| Sbjct 12491 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 12550 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | | |||||| ||||| ||||| | ||| |||||||| ||||| ||||| Sbjct 12551 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 12610 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGAT--TTTATCTTTTAGATGTTCCCAAT 62556 | |||||| ||||| | ||| |||||||||| ||| | ||| | | ||||| Sbjct 12611 AGCAATAATGAATTTCGTACACC--ATGTTCTGATATTTTTTGTTTCAACAAATTCCAAT 12668 Query 62557 TCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTG 62612 ||| | ||| | || ||||| ||||||| ||| || || || | Sbjct 12669 CCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCG 12728 Query 62613 GCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | ||||| ||| | ||||| || || || | | ||||| ||| || Sbjct 12729 GTG----ATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCT 12784 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC 62725 ||||||||||| | ||| || || ||||| || | |||||| || || | ||| Sbjct 12785 TCTAATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 12837 >seq717 Length=48811 Score = 190 bits (210), Expect = 3e-43 Identities = 231/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 ||||||||||||| || || ||||| ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 34023 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 34078 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 34137 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4170 Query 34138 GATATTGGAT 34147 ||||| ||| Sbjct 4169 AATATTTGAT 4160 Score = 159 bits (176), Expect = 4e-34 Identities = 316/458 (69%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-AAtttttttAAATC 33396 || || ||||| |||||||| ||||| ||| || |||||| | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4998 Query 33397 CCAATT--CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33453 |||| | || ||| |||||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4997 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4939 Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4938 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4880 Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTA 33572 |||| | | ||||||| | || |||| | ||| | || | || ||| | Sbjct 4879 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4821 Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 || | | |||||| ||||| || |||| || || |||| | ||||| |||||| ||| Sbjct 4820 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4761 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | ||| ||||| | || | || || | |||||| || || ||||| | ||| Sbjct 4760 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4701 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 |||||||| |||||||| || || ||||| || | ||| Sbjct 4700 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 >seq114 Length=70618 Score = 109 bits (120), Expect = 7e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 |||||||| |||| | | || ||| || || |||||||| | | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 63792 GGTCTTTCAACAA 63804 ||||||||||||| Sbjct 58077 GGTCTTTCAACAA 58065 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62914 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 62915 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 ||| |||| ||||| | |||| || || || | |||||| |||||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || |||| | | | ||||| | || ||||| || | |||| || | ||||| Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 59135 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 59092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733086350800