Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1702 338 8e-88 seq717 190 3e-43 seq114 102 1e-16 >seq1702 Length=19207 Score = 338 bits (374), Expect = 8e-88 Identities = 673/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 66039 ||| || || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 66040 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 13578 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 13635 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 |||||||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 13636 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 13695 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||| ||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 13696 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 13755 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || || || | ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 13756 CCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 13815 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGA 66338 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 13816 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 13875 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 13876 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 13935 Query 66399 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 13936 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 13994 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 13995 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 14054 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 14055 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 14114 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 || || || | || | | || |||| || | || ||| |||| | ||| Sbjct 14115 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 14174 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 |||||| |||||||| || ||| | | | || || ||||| || || || ||||| Sbjct 14175 TTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTT 14234 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 66753 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 14235 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 14290 Query 66754 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 66813 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 14291 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 14350 Query 66814 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGAT 66873 | |||||||| || ||||| || || || || | ||| || | | |||||| ||||||| Sbjct 14351 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 14410 Query 66874 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 66933 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 14411 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 14470 Query 66934 CTCCATTATATATTCCTTGGATAACCTT 66961 | || | ||| | |||| || ||||| Sbjct 14471 CACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 65901 TCTATAATCGCTTTCCAGAC 65920 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA-AAtttttttAAATC 35972 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4998 Query 35973 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 36029 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 4997 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4939 Query 36030 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 36089 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4938 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4880 Query 36090 CCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 36148 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 4879 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4821 Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 4820 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4761 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 4760 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4701 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306 |||||||| |||||||| || || ||||| || | ||| Sbjct 4700 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 36599 AAATATTTTTCGT-TTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 36654 || ||||||| | | || | |||||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4176 >seq114 Length=70618 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 66405 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 |||||||| |||| | | || ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 66524 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 66525 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 66585 GGTCTTTCAAC 66595 ||||||||||| Sbjct 58077 GGTCTTTCAAC 58067 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 65589 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 65648 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 65649 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 65707 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 65708 ----TCGCTCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 65762 ||| | |||| ||||| | |||| || || || | ||||||||||||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 65763 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 65822 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 65823 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 65868 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 59135 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 59092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084481437400