Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2141 131 2e-25 seq202 118 1e-21 seq865 104 2e-17 seq498 91.5 1e-13 seq1933 87.8 2e-12 >seq2141 Length=12878 Score = 131 bits (144), Expect = 2e-25 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTT 139613 |||| |||| || ||||||||||||||||||||||| | | | | ||| ||||| Sbjct 5112 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTT 5055 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | || ||||| ||||| | || ||||||||||| || || || || ||||||||||| Sbjct 5054 CAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-T 4996 Query 139674 TGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| |||||| |||| | || || | ||||||| | || || |||| ||| | ||| Sbjct 4995 TGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTC 4936 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | ||||| ||||| |||||||| Sbjct 4935 TTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||||| || || |||||||| ||||||||||| Sbjct 5817 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 5758 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| | || |||||||| | |||| |||||||||||| ||| Sbjct 5757 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGA 5698 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || ||||| || ||| |||| ||||| | ||| || | || || | | || Sbjct 5697 GGGATACCCTCTTTATC-TTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTC 5639 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||| || || | |||||||| || ||||||||| Sbjct 5638 GACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCATA 5587 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | |||| || || ||||||||||| || || ||| Sbjct 5358 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 5299 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || ||||||||||| | || ||||||||||| || || || Sbjct 5298 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 5240 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| |||| | ||||| || || | || || | || ||| | Sbjct 5239 GATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTA 5181 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | ||| | || |||||||| | || |||||||| ||||||||| || Sbjct 5180 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCATACCT 5128 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || |||||||||||||| || || || Sbjct 5586 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 5527 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || |||||||| || | || |||||||||||||| || || Sbjct 5526 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 5468 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | |||| ||||| || || | || |||| | ||| | Sbjct 5467 AATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 5409 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || | ||||| || || ||||||||| Sbjct 5408 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 5359 >seq202 Length=70977 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||||||||| || | Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | ||||||||||| |||||| ||||| ||||| || || Sbjct 30776 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 30717 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | |||| |||| | || || | || || | || ||| || Sbjct 30716 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 30658 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||||| |||||| ||||| ||||||||| Sbjct 30657 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 30609 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 30608 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 30549 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||||||||| |||| | ||||| ||||| ||||| Sbjct 30548 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 30489 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT-GTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| |||| || | || | || || ||| ||| || Sbjct 30488 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 30430 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || ||||||||||||||| Sbjct 30429 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 30381 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||||||||| |||||||| | || | ||||| | ||||||||| Sbjct 31490 GTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCA 31431 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||||||||||| ||||| || ||||| || || ||| | |||| ||| Sbjct 31430 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC-TTGAATCTTTGCTTT 31372 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || | || || | || ||| || |||| ||| | || || ||||| | || Sbjct 31371 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 31312 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 31311 CTTGACGAAAATTTGCATA 31293 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| |||||| ||||| ||||| ||||| Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||||| || || | || || | || ||| || Sbjct 30944 ATACCTTCTTTATC-TTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 30886 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 30885 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 30837 >seq865 Length=39574 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || ||||| ||||| || || ||||| | Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||| ||| |||||| ||||||||||| || || Sbjct 10129 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 10071 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | |||| | || || | || || | || ||| | Sbjct 10070 AATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 10012 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 10011 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 9962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || ||||||||||| || ||||| ||| | Sbjct 9961 CCACCTCTAAGACGGAGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGAC 9902 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||||||||| |||||| ||||||||||| ||||| Sbjct 9901 AAAGTACGTCCA-TCTTCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 9843 Query 139657 TATGCCT 139663 || ||| Sbjct 9842 AATACCT 9836 >seq498 Length=39471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||||||| | || ||||| | || || ||||||||||| || |||||| Sbjct 34891 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 34832 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || | Sbjct 34831 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 34773 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || |||||||| || ||||||| ||| | | || | || ||| | || | Sbjct 34772 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 34713 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || || | ||||| || || |||||||| Sbjct 34712 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 34664 >seq1933 Length=16258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || |||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 3941 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 3882 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| | | ||| | | || ||||| |||| || || || |||| || | Sbjct 3881 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCGGAGGCATCAACTTCAATGGCAATT 3822 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| | | ||||| || || ||||| ||| Sbjct 3821 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495997434412000