Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1702 343 2e-89 seq717 199 6e-46 seq114 105 1e-17 >seq1702 Length=19207 Score = 343 bits (380), Expect = 2e-89 Identities = 672/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| ||| |||||| ||| | ||| |||| | Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGA----TCAAATA 13573 Query 79920 CCACTCTCCATCATCCTTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 |||| | || ||| ||| || | ||||||||| ||||| | || |||||| || Sbjct 13574 A-ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 13631 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 13632 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 13691 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 13692 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 13751 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||||||||||| ||||||||||| | ||||| |||||||| || Sbjct 13752 TCCTCCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCC 13811 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 13812 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 13871 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 13872 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 13931 Query 80274 GCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 13932 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 13990 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 13991 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 14050 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| || |||||||| | ||| ||||| | ||||| || ||||| || ||||| | Sbjct 14051 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 14110 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || || || | || | | || | |||| || | |||||| |||| | Sbjct 14111 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 14170 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 ||||||||| |||||||| || ||| | | | || || ||||| || || || | Sbjct 14171 GAGTTTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAA 14230 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 |||| ||| || || | || | || || | ||||| || | | ||| Sbjct 14231 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 14290 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 14291 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 14350 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | ||||| || || ||||| || || || || | || || | | |||||| || |||| Sbjct 14351 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 14410 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 14411 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 14470 Query 80813 CTCCATTATATATTCCTTGGATAACCTT 80840 | || | ||| | |||| || ||||| Sbjct 14471 CACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | || || || || | |||||||| || || || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||||| | ||| || || || || | || ||||| ||||| ||||| ||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 79780 TCTATAATCGCTTTCCAGAC 79799 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 199 bits (220), Expect = 6e-46 Identities = 325/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 49774 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4998 Query 49775 CCAATT--CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 49831 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 4997 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4939 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4938 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4880 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 49950 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 4879 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4821 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 4820 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4761 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||| | || | || || | |||||| || ||||| || | ||| Sbjct 4760 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4701 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| |||||||| || |||||||| || ||||| Sbjct 4700 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 Score = 178 bits (196), Expect = 2e-39 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 50401 AAATGTTTTTCGTTGGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATATATC 50456 || |||||| || ||| |||||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 50515 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4170 Query 50516 GATATTGGAT 50525 ||||| ||| Sbjct 4169 AATATTTGAT 4160 >seq114 Length=70618 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||||| |||| | | || ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 80464 GGTCTTTCAAC 80474 ||||||||||| Sbjct 58077 GGTCTTTCAAC 58067 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 79057 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGT 79113 |||||||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 59952 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 59896 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | ||||||| ||||| | ||| ||| || ||||| || ||||| ||||| | | Sbjct 59895 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 59836 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 || ||| ||||| | || ||| ||||| || ||||| | | |||| ||||| Sbjct 59835 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 59776 Query 79234 AGATCAGACGG 79244 |||| || || Sbjct 59775 CGATCTGAAGG 59765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718172417305400