Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1702 352 4e-92 seq717 181 1e-40 seq114 96.9 5e-15 >seq1702 Length=19207 Score = 352 bits (390), Expect = 4e-92 Identities = 675/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| ||| ||| |||||| |||| |||| || ||| | Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGAT-CA--AATAA 13574 Query 72003 CCACTCTCCATCATCATTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 |||| | || ||||||| || | ||||||||| ||||| | || |||||| || Sbjct 13575 --ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 13631 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 13632 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 13691 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 13692 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 13751 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | ||||||||||| ||||||||||| | ||||| |||||||| || Sbjct 13752 TCCTCCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCC 13811 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || |||||| || || | ||||| ||| | |||||||| || ||| Sbjct 13812 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 13871 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 13872 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 13931 Query 72357 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 13932 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 13990 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 13991 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 14050 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || |||||||| | ||| ||||| | || || || ||||| || ||||| | Sbjct 14051 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 14110 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||| || || | || | | || | |||| || | || ||| |||| | Sbjct 14111 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 14170 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 ||||||||| |||||||| || ||| | | | || || ||||| || ||||| | Sbjct 14171 GAGTTTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAA 14230 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTT 72715 |||| ||| || || | || |||| || | ||||| || | | ||| Sbjct 14231 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 14290 Query 72716 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 14291 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 14350 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 | ||||| || || ||||| || || || || | || || || | |||||| || |||| Sbjct 14351 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 14410 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || | || || ||||||| |||| | | || ||||| || || | | Sbjct 14411 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 14470 Query 72896 CTCCATTATATATTCCTTGGATAACCTT 72923 | || | ||| | |||| || ||||| Sbjct 14471 CACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| | ||| || | | |||| ||||| || || || |||| | | | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | ||| || || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || ||||| | ||| || || || ||| | || ||||| ||||| ||||| ||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 71863 TCTATAATCGCTTTCCAGAC 71882 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 181 bits (200), Expect = 1e-40 Identities = 321/458 (70%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||||||||| |||||| || || || |||||||| || ||||| || || |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 41879 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4998 Query 41880 CCAATT--CAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT-TTCAC 41936 |||| | || ||| |||||||| || | ||||| |||||| ||||||| | ||| | Sbjct 4997 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4939 Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4938 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4880 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 42055 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 4879 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4821 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 || | | |||||| ||||| || |||| || ||||||| | ||||| |||||||||| Sbjct 4820 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4761 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 4760 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4701 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 |||||||| |||||||| || || ||||| || | ||| Sbjct 4700 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || || | ||| | ||| ||||| || |||||||||||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||||||||| || |||||||| || || | || || ||||| ||| ||| ||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 |||||||||| || || || || || ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 42506 AAATATTTTTCGTCCGGTGTTAA-TTTA---TTCCAATCATTGATATCTTTAGATATATC 42561 || ||||||| | | ||||| |||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 ||||| || || ||||||||||| ||||| |||||||| ||||| | |||||| Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4176 >seq114 Length=70618 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 |||||||| |||| | | || ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 ||||||| || ||||| | ||| ||||| | | |||||||| ||||| || || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 72547 GGTCTTTCAAC 72557 ||||||||||| Sbjct 58077 GGTCTTTCAAC 58067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671049141508600