Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2141 113 4e-20 seq498 98.7 8e-16 seq865 95.1 1e-14 >seq2141 Length=12878 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| |||||||||||||| || | | ||| | ||||| Sbjct 5569 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 5510 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| || | |||||||| ||| | || |||||||| Sbjct 5509 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 5450 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || |||||| || ||| |||||| || ||| ||| | ||||||||||| Sbjct 5449 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 5390 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||| |||||||||||||| Sbjct 5389 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 >seq498 Length=39471 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| || || || || ||||||||||||||||| | | || | || || Sbjct 34872 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 34813 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||||||| ||| | || | | || |||||| ||| | || ||||| || | Sbjct 34812 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 34753 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| | ||| || | ||| ||||||| | || ||| | |||||||||||| Sbjct 34752 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 34693 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT-TTTAAA 19047 || || | ||||| |||||||||||||| |||||| Sbjct 34692 CCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 34657 >seq865 Length=39574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| ||||||||||| | || || | || |||| |||||||| Sbjct 10159 GTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCG 10100 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | ||||||||| ||| | ||| |||||||| ||| ||| ||| Sbjct 10099 GCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTA 10040 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || ||| | | ||||| | ||| ||| | ||||| |||||||| || | ||| Sbjct 10039 ACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTC 9980 Query 19025 TTGACAAAAATTTGCAT 19041 || || ||||||||||| Sbjct 9979 TTAACGAAAATTTGCAT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414518560274590