Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq865 132 3e-26 seq498 129 4e-25 seq2141 105 4e-18 seq202 87.8 1e-12 seq446 84.2 1e-11 >seq865 Length=39574 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||| | ||| | || ||||| ||||| ||||||||||| || Sbjct 10190 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 10131 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || |||||||| || || ||| || || |||||||| |||| ||| Sbjct 10130 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 10071 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || |||| | ||| ||| | ||| || || || | || Sbjct 10070 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq498 Length=39471 Score = 129 bits (142), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || | ||||| || ||||| || |||||||| ||||||||||| || Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA- 34832 Query 33203 AAATTGA--GTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 || ||| || || || || || || ||| ||||||||||||||| || |||| || Sbjct 34831 -AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 34773 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || |||||||| || ||| | ||| ||| | | || || ||| | || || Sbjct 34772 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 34713 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 | || | ||| || ||||| || ||||| ||||| || |||||||||||||||| Sbjct 34712 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 34659 >seq2141 Length=12878 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-AT 33218 ||||||||| | ||| ||||||||||| |||||||| ||||| | | ||| ||| || Sbjct 5569 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAA----GGGTTCGTCCAT 5514 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||| || || || || | ||||||||| || | ||| || |||||||| | Sbjct 5513 CCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGT 5454 Query 33276 CGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 | |||| ||||||| | || || ||| | | ||| |||| ||| || | Sbjct 5453 CTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGG 5394 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||| || |||||||| || ||||||||||| Sbjct 5393 TTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| || || ||||| || | | | ||| || | ||| || ||| Sbjct 5100 GTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCA 5041 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | |||||||||||| | ||| || |||||||| || ||| ||| Sbjct 5040 GCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTA 4981 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 ||| | ||| |||||| | || ||| || || || || || ||||| ||||| ||| Sbjct 4980 ACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTT 4921 Query 33353 TTTACGAAAATTTGCATGTTTATGGTTAAT 33382 || ||||| ||||||||| || |||||| Sbjct 4920 TTAACGAAGATTTGCATG---ATTGTTAAT 4894 >seq202 Length=70977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || | ||| | || || |||||||| ||||| ||||| || Sbjct 31065 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 31006 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || ||||| || ||| || || || ||||| || || | || Sbjct 31005 CAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGG 30946 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| | ||||||| | || || || || | || Sbjct 30945 GATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 30886 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || || || || || |||||||||||||| Sbjct 30885 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 >seq446 Length=157017 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| || ||||||| ||| ||||| |||| || ||| | | || |||||||| Sbjct 26251 ATGCAACGTAGACTCTTCTTGAATATTACAATCTGATAAAGTTTTTCCATCCTCCAATTG 26192 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT-TTTTCGCTAATCG 33284 ||| ||| ||| || | |||||||||||| | || ||||||||| ||||| | | Sbjct 26191 CTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCTTTTTTCTCGA---- 26136 Query 33285 CCT--GTTTTACT-GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTC 33341 ||| | |||| | | | ||| |||||| | | | || || || | | ||||||| Sbjct 26135 CCTTAGATTTAATCATATCAATAGTGTCGCTTGAATCAAAATCTAGGATAACTGTTTTTC 26076 Query 33342 CCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 | || | ||||| || ||||||| | | ||||| Sbjct 26075 CGGTCAATGTTTTCACAAAAATTTCCCT-TTTAT 26043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318735893430030