Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq202 123 2e-23 seq865 118 8e-22 seq498 114 9e-21 seq2141 91.5 1e-13 seq1345 84.2 2e-11 >seq202 Length=70977 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| ||| ||| |||| ||||||||||| || || || Sbjct 31484 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 31425 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || |||| | |||||| |||||| ||| ||| ||| || Sbjct 31424 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 31365 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 31364 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 31305 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 31304 AAAATTTGCAT 31294 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| || ||| |||| || |||||||| || || || Sbjct 31028 TCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAG 30969 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || |||| | ||||||||||||| ||| || ||| || | Sbjct 30968 ATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGA 30909 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 30908 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACG 30849 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 30848 AAAATTTGCAT 30838 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||||||||| || ||| ||| |||| ||||||||||| || || || Sbjct 31256 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 31197 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || | || | |||||| |||||| ||| ||| ||| || | Sbjct 31196 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 31137 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | |||||| || Sbjct 31136 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACG 31077 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 31076 AAAATTTGCAT 31066 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| || |||| |||| ||||||||||| || || || Sbjct 30572 TCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAG 30513 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || |||| | ||||| |||||| ||| ||| ||| || | Sbjct 30512 ATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 30453 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | ||| || || | ||||| ||||| || || | ||||| || Sbjct 30452 TCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACG 30393 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 30392 AATATTTGCAT 30382 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | || | ||| || ||| ||||||||||| ||||| || Sbjct 30837 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGA 30778 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || || || ||||| ||||| || || | || Sbjct 30777 CAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 30718 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| ||| ||| || | | ||||| | | ||| || Sbjct 30717 GATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 30658 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| | || || || || |||||||| Sbjct 30657 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 >seq865 Length=39574 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | ||| | ||| || || ||| ||||| ||||| ||||| Sbjct 10190 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 10131 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||||||||| || ||||| ||||| |||||||| ||| | || Sbjct 10130 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 10071 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| || ||| ||||||| | ||| || Sbjct 10070 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||||||||| | |||||| || || |||||||| Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq498 Length=39471 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| |||| || |||||||||||||| |||||| | | ||| |||| || Sbjct 34872 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 34813 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || |||||||| || ||||| || ||| | || | |||||||||||| | Sbjct 34812 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 34753 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||| |||||| || | | ||||| || || || | ||||| |||||| Sbjct 34752 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 34693 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || || | || || ||||| |||||||||| Sbjct 34692 CCAGTAAGTGTTTTAACAAAAATTTGCATGT 34662 >seq2141 Length=12878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||||||||||||||| || || | || |||| || Sbjct 5569 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 5510 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || || || || | |||||||| || | || | ||||||||| ||| Sbjct 5509 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 5450 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||| ||| || | | | ||||| | | ||| || || | ||||| ||||| Sbjct 5449 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 5390 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||| || ||||| |||||||| Sbjct 5389 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 >seq1345 Length=28361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||||||||||| || ||||||||||| | || |||| |||| || ||||| Sbjct 3641 ATGAAGTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCCCATCTTCTAATTG 3582 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 |||||| ||||| || | ||||| | || ||| | ||||| |||||| ||| | Sbjct 3581 TTTTCCAGCAAAAATAAGACGTTGTTTATCAGGAGCAATTCCTTCCTTATCTTGAATCCT 3522 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| | || ||||| | || ||| || || | || | ||||| ||| | Sbjct 3521 GACTTTAATTTGGTTAATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGAT 3462 Query 44098 TAAAGTCTTCACAAATATTTGCATGTCGA 44126 || || || ||||||| |||||| ||| Sbjct 3461 TAGTGTTTTTACAAATACCTGCATGGCGA 3433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354731183448780