Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq717 221 1e-52 >seq717 Length=48811 Score = 221 bits (244), Expect = 1e-52 Identities = 317/441 (72%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || | ||||||||| || |||||||| |||| ||| ||| Sbjct 5103 TTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAA 5044 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||||||||| |||||||| | ||| ||| ||||| | || | | | | ||| Sbjct 5043 ATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAA 4984 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| ||||| ||||| || || || | ||||||||||| |||||| || ||||| Sbjct 4983 TAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAA 4924 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTT-CGATAACTA 13097 || || || | |||||||||||||| | || |||||| ||| |||| || || || Sbjct 4923 ATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTA--TA 4866 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTG---ATAGATGCTTAAACATCATACATG 13154 | ||| ||| | | | |||||| || ||||| | || | | ||||| Sbjct 4865 -ATAGCTT-CTACAGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATG 4808 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||||| |||||||||||||||| | ||||| ||||| ||||| |||| || | Sbjct 4807 CAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTG 4748 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | |||||| || | || || | || ||||| ||||||| Sbjct 4747 GCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTC 4688 Query 13275 CTTCAACTGCTGCAAACGCTA 13295 ||||||| || |||||||||| Sbjct 4687 CTTCAACAGCGGCAAACGCTA 4667 Score = 114 bits (126), Expect = 1e-20 Identities = 196/280 (70%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||||| ||| ||||| | | |||||||||||||| |||||||| ||| || || Sbjct 4462 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4403 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || |||||||||||||| || |||| | || ||||| | ||||| | ||| |||| Sbjct 4402 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAA-CGTTCCACTAA 4344 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||| || || || || || || ||||| || || | | ||| |||||| Sbjct 4343 ATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAA 4284 Query 13600 tttttCGTTTTCTGACAACTTTA----ACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 |||||| | || | || |||| |||||| | ||| || || | || || | Sbjct 4283 TTTTTCTTCATC-GTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTT 4225 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||||||| |||||||| ||||| | ||||| || ||||| Sbjct 4224 CCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 4185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430926013360470