Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2141 107 2e-18 >seq2141 Length=12878 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||||||||| ||| |||||||| ||||| |||| | ||| | ||||| Sbjct 5569 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 5510 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || || |||||| || |||| | ||| |||||||| || | || ||| ||||| Sbjct 5509 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 5450 Query 48637 AATTTTCTGC--TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| || | || | |||||||||| |||||| || | || |||||| Sbjct 5449 AATCTT-TGCTTTTACTTGA-TCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTT 5392 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| |||||||| ||||| Sbjct 5391 TTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421196086520735