Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq148 152 6e-32 seq174 102 1e-16 seq268 86.0 7e-12 >seq148 Length=94477 Score = 152 bits (168), Expect = 6e-32 Identities = 250/354 (71%), Gaps = 10/354 (3%) Strand=Plus/Minus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||||||| | | | || ||||||||||||||| | ||||||||| Sbjct 50408 TACCAGCTGGATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGAGTA-TTTTTAATT 50350 Query 7115 TTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || | || | ||| | |||||| | ||| | ||| |||| |||| |||| Sbjct 50349 TTATCGATGACCTCTTGCAGTTGATCAACACCTTTACCAGTGTAATCCGTATCGCAATCA 50290 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || | ||| ||||||||||||||||| || ||||||| |||||| |||||||||||| Sbjct 50289 ATGTACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCT 50230 Query 7234 TCACGATGATTAAATCCTAA-TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 | | ||| | | | || || | || |||| ||| || |||| | | ||||| Sbjct 50229 TTTCTATG-TGATAGCCCAATTTTATCCAAAT---ATTCACGAGAACCATTACCGTCCCA 50174 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 |||||| | | ||||| | ||||| | ||||||| ||||||| |||||||| Sbjct 50173 AATATGAATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAA 50114 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | |||||||| || ||||| ||| | | || || || |||||||| || Sbjct 50113 TAATTCTTCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGGTAA 50060 Score = 118 bits (130), Expect = 1e-21 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATC--TAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTAT 6757 |||||||| | |||| | ||| ||| |||||| ||| ||||||||||| | ||||| Sbjct 50840 GGATGAGGTTCATAACCAGTAATAAT--AAAATCATCATATTTAAAATCATCAATATTAT 50783 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTC 6815 | | ||| | ||| || ||| | || | ||| | | || ||| | ||| Sbjct 50782 TA-ATTTTGCGTCTAAATTTCAAACGAGGAAATGCTTT-TGGTTCACGTTCGATTTGAGT 50725 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||||| ||| || |||||||| ||| ||||||| ||| || | |||||||||||||| Sbjct 50724 TTTTAAAGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTC 50665 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 ||| || | | | | |||||||| | || ||||||| ||||| || | Sbjct 50664 ACCAGGACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAAT 50605 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT 6995 ||||| |||||||| | ||| | ||| ||||||||||||| |||| ||||| | Sbjct 50604 GTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCT 50545 Query 6996 ATT-GTCT---ATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 || || | ||| |||| ||||| || || | ||||||||| ||||| Sbjct 50544 TTTCGTATTTGATA-CATAGAATTGGCAAAACATATGACATGGTGGTAA 50497 >seq174 Length=105385 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||| | |||||||||||||||||||||||||| || || Sbjct 44877 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCCGAAGGG 44936 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || | ||||| ||| | ||||| || |||||| |||||||||| |||||| || Sbjct 44937 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGACGATT 44990 >seq268 Length=96288 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || ||||| || ||||| || || | | || ||| ||||| ||| ||| || Sbjct 35042 AATTCCAGAAATTGGAGATAAATTCGCGAGTCGTCATGGTCAGAAAGGAACAATTGGAAT 35101 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | ||||| ||||||||||||||| ||| || ||||||| || || ||||||| Sbjct 35102 CACTTATCATCAAGAAGATATGCCATTTGCTGCTAATGGTATTACACCTGACATTATTAT 35161 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||| |||| ||||| ||||| Sbjct 35162 AAATCCACACGCTATTCCTAGTCGTATGAC 35191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595792041426000