Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq202 107 2e-18 seq2141 102 7e-17 seq865 95.1 1e-14 >seq202 Length=70977 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | Sbjct 30620 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATA 30561 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| ||| |||| ||||| || | |||||||| | ||| Sbjct 30560 TTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGT 30501 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| || || | ||| ||||| || || | | ||| ||| Sbjct 30500 TGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCA 30441 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || |||||||| |||||||| || || || || || ||||| Sbjct 30440 TTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | | Sbjct 30848 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATG 30789 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| || | | | ||| || ||| || | ||||| || | ||||| || | || Sbjct 30788 TTATAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTT 30731 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| || ||||||||||| || | ||| ||||| || || | | | || | Sbjct 30730 GTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTAT 30671 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| ||||| ||||| || || || ||||| || || || |||| Sbjct 30670 CAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCA 30611 Query 95007 T 95007 | Sbjct 30610 T 30610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||||||||| ||||| | |||||||| ||| || || ||| |||| ||||| Sbjct 31491 AGTAGATTCTTTTTGAATATTATAATCCG--ATAAAGTACGACCATCTTCCAATTGTTTA 31434 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | ||||| || | |||||||||||||||||||||||| || || | ||| ||||| Sbjct 31433 CCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCT 31374 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | || |||| | || || |||| || || ||||| || || || Sbjct 31373 TTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGG 31314 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| Sbjct 31313 GTCTTGACGAAAATTTGCAT 31294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||||||||| | Sbjct 31304 AAAATTTGCATACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATA 31245 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| |||| ||||| ||| | ||||| || | ||| Sbjct 31244 TTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGT 31185 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || |||||||| || || | ||| ||||| || || | | || ||| Sbjct 31184 TGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCA 31125 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| |||| || || ||||| || || ||||| || || || || ||||| Sbjct 31124 GAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 >seq2141 Length=12878 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 ||| || || ||||| | ||||||||| | | || || || || || || ||||| Sbjct 5101 AGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTTCAAGTTGTTTG 5044 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | | |||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 5043 CCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCT 4984 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | |||||| | || || |||| ||||| || ||||| ||||| Sbjct 4983 TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGG 4924 Query 94988 GTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||| |||||| || Sbjct 4923 GTTTTAACGAAGATTTGCATGATT 4900 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| | || || | | |||||||||||| |||||||||||||| Sbjct 5515 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 5456 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||| || || ||| || || | || || || | || || Sbjct 5455 GTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 5396 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| |||||||| ||||| || ||||| Sbjct 5395 GGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | ||||||||| | || || || ||| |||| Sbjct 5791 GTGAAGAGTTGATTCTTTTTGGATGTTATAATCCG--AAAGAGTACGACCATCTTCCAAT 5734 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || | || || || | ||||||||||||||| ||||| ||||| || | |||| Sbjct 5733 TGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATT 5674 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | || || | | || |||| ||||| |||| || || || || ||| Sbjct 5673 TTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCA 5614 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || ||||| Sbjct 5613 GTAAGTGTTTTTACAAAAATTTGCAT 5588 >seq865 Length=39574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | ||| | || | ||| || |||||||| | Sbjct 10202 AAAAATCTGCATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGAT 10143 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || || ||| |||| ||||| ||| ||||||| || | ||| Sbjct 10142 ATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTG 10083 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || ||||| ||||||||||| | ||| || || || || | | | || || Sbjct 10082 CTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATC 10023 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || |||||||| || || || || ||||| Sbjct 10022 TGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || |||| || |||||||| ||||||||||| |||||||||||||| | ||| Sbjct 10337 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 10278 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| |||||| | | || |||| || || |||| || || ||||| || Sbjct 10277 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 10218 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| |||||||| Sbjct 10217 GGTGAGGGTCTTTACAAAAATCTGCAT 10191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231044924600