Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2141 134 2e-27 >seq2141 Length=12878 Score = 134 bits (148), Expect = 2e-27 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | ||||| |||||||| ||||| ||||||||||| || || Sbjct 7451 CGCTAAGCGCCATCGTAAAATCCTTCGTGATAACATTCAAGGTATCACCAAGCCTGCCAT 7392 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||||||||| || ||| |||| || | |||| ||||| | Sbjct 7391 CCGTCGTCTTGCTCGTCGTGGTGGAGTAAAACGTATCTCGGGTCTCATCTACGAAGAAAC 7332 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||||| ||| ||||| | ||||| Sbjct 7331 TCGTGGTGTCTTGAAAGTGTTCCT 7308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065384914355