Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5 104 4e-17 >seq5 Length=157215 Score = 104 bits (114), Expect = 4e-17 Identities = 207/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 193806 GAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGC 193865 ||||| |||||| || | | || || | ||||||||||||||| || |||| || Sbjct 130703 GAACTTTATGGTAAAGTCGTTGAAACACCTCAATCAGAAACCACACCTTTCTATCCTCGT 130762 Query 193866 TCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCA 193925 || |||||||| || || || ||||| | | ||||| | | ||||||||||| | Sbjct 130763 TCACCTTATGGAGTTGCCAAATTGTACGCACACTGGATTGTAACTAATTATCGTGAAGCC 130822 Query 193926 TATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAG 193985 || | ||| || || || | || ||||| |||||||| | | ||| Sbjct 130823 TACAATATGTTTGCTTGTAACGGCGTTTTATTTAATCATGAATCTCCTCGTCGTGGTCGT 130882 Query 193986 ACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAG 194045 ||||| ||||||||||||||| ||| | | || || | || || |||| || | ||| Sbjct 130883 ACATTCGTAACTCGTAAGATTTCACGTGCTGTAGCTGAAATTTC-CTTGG-GTAAACAAG 130940 Query 194046 ATTCTTTAT--CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATG 194103 | | ||| | |||||||| || |||| || | |||||||| || || | |||||| Sbjct 130941 AATGTTTGTGGCTTGGTAACGTTGATGCCAAACGTGATTGGGGTCATGCCAGAGATTATA 131000 Query 194104 TTG 194106 ||| Sbjct 131001 TTG 131003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807446836186600