Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1702 338 8e-88 seq717 190 3e-43 seq114 102 1e-16 >seq1702 Length=19207 Score = 338 bits (374), Expect = 8e-88 Identities = 669/984 (68%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 63195 ||| || || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 63196 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 13578 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 13635 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 13636 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 13695 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||| |||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 13696 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 13755 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || || || | ||||||||||| ||||||||||| | ||||| |||||||| || ||| Sbjct 13756 CCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 13815 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 13816 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 13875 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || ||||| | ||||| || | ||||||| ||| || || |||||||| ||| Sbjct 13876 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 13935 Query 63555 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 13936 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 13994 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 13995 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 14054 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 14055 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 14114 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 || || || | || | | || |||| || | || ||| |||| | ||| Sbjct 14115 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 14174 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 |||||| |||||||| || ||| | | | || || ||||| || || || ||||| Sbjct 14175 TTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTT 14234 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 63913 ||| || || | || |||| || | ||||| || | | ||||||| Sbjct 14235 TTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 14294 Query 63914 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 63973 |||| ||||| | ||| || | | ||| || | || | ||| | |||||| || Sbjct 14295 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 14354 Query 63974 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64033 ||| || || ||||| || || || || | || || || | |||||| |||||||||| Sbjct 14355 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 14414 Query 64034 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 || || | || || |||| || |||| | | || ||||| || || | || || Sbjct 14415 AGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACACC 14474 Query 64094 ATTATATATTCCTTGAATAACCTT 64117 | ||| | |||| ||| ||||| Sbjct 14475 TTGATAAACTCCTGAAATGACCTT 14498 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 63057 TCTATAATCGCTTTCCAGAC 63076 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 190 bits (210), Expect = 3e-43 Identities = 231/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| |||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 | ||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 33745 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33800 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGT-CAT 33859 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4170 Query 33860 AATATTGGAT 33869 |||||| ||| Sbjct 4169 AATATTTGAT 4160 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 33118 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4998 Query 33119 CCAATT--CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33175 |||| | || ||| |||||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4997 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4939 Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4938 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4880 Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 33294 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 4879 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4821 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 4820 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4761 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | ||| ||||| | || | || || | |||||| || || ||||| | |||| Sbjct 4760 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4701 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 |||||||| |||||||| || || ||||| || | ||| Sbjct 4700 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 >seq114 Length=70618 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63561 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620 |||||||| |||| | | || ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 63741 GGTCTTTCAAC 63751 ||||||||||| Sbjct 58077 GGTCTTTCAAC 58067 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 62334 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 62390 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 59952 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 59896 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 59895 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 59836 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62510 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 59835 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 59776 Query 62511 AGATCCGACGGT 62522 |||| || ||| Sbjct 59775 CGATCTGAAGGT 59764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863608272600