Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2141 136 3e-27 seq6 116 3e-21 seq202 105 6e-18 seq498 98.7 9e-16 seq730 87.8 2e-12 seq865 84.2 2e-11 >seq2141 Length=12878 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||||||| | ||||| | ||||| ||| | | Sbjct 5360 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 5419 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| ||||||| ||||||||||| || || || ||||| Sbjct 5420 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 5479 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||||| || |||| ||| | | || || || Sbjct 5480 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 5539 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || ||| ||||||| ||| Sbjct 5540 ATTCAAAAAGAGTCAACACTTCATTTGGTG 5569 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || ||| | ||||| || | | Sbjct 4904 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 4963 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || ||||| ||| ||| ||| ||||||||||| || || || || || Sbjct 4964 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 5023 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||| ||||| ||||| | | | | | ||||||||| Sbjct 5024 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 5083 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||| || || ||||| |||| Sbjct 5084 ATTCAAAAAGAGTCAACTCTTCATCTAGT 5112 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||| | ||||| || |||||||| | || ||||| | Sbjct 5588 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 5647 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || || || ||| || ||| || ||||| || || ||||| ||||| Sbjct 5648 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 5707 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || || |||||| | ||||||| | | | ||||||||| Sbjct 5708 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 5767 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||||||||| || |||| Sbjct 5768 ATCCAAAAAGAATCAACTCTTCA 5790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| ||| | || || ||| | || ||| | || || ||| || Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| || ||| || || || || || || || || || Sbjct 5192 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 5251 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || || || ||||| || |||| ||| | | ||| || || Sbjct 5252 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 5311 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||||||||| || ||||| Sbjct 5312 ATTCAAAAAGAATCCACTCTTCAT 5335 >seq6 Length=229349 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 23997 GTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACC 24056 |||| || |||||||||||||||||| | | || || ||||||||| | || || Sbjct 14179 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 14120 Query 24057 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGA 24116 || || ||| | ||| ||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 14119 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 14060 Query 24117 CTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAA 24176 | |||| | || |||||||| ||||||| | | | | || ||||| || || Sbjct 14059 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 14000 Query 24177 AAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTAT 24222 || || || | |||||||| |||||||| || || || |||| Sbjct 13999 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG-CTAT 13955 >seq202 Length=70977 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | |||||| | ||||||||| |||| Sbjct 30382 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 30441 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || ||||| ||| ||||||| || || ||||| || ||||| |||||| Sbjct 30442 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 30501 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | | || | || || || ||| | ||||||| | | ||||| |||||| Sbjct 30502 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 30559 Query 24169 ACATTCAAAAAGAATCTAC 24187 | |||||||||||||| || Sbjct 30560 ATATTCAAAAAGAATCAAC 30578 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||||||| || Sbjct 30838 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 30897 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| || |||||||| || ||||| |||||| Sbjct 30898 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 30957 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | |||| | || || || ||| | ||||||| | | ||| | |||||||| Sbjct 30958 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTA-CGTTGTCAGATTATAA 31016 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 31017 TATTCAAAAAGAATCAAC 31034 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | |||||| | ||||| ||| || Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || || ||||| || ||||| ||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 31413 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 || | |||| | || || || ||| | ||||||| | | | | | || ||||||| Sbjct 31414 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTA-CTTTATCGGATTATAA 31472 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||||||||||| Sbjct 31473 TATTCAAAAAGAATCTAC 31490 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | || || | ||||| ||| || Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || |||||||| || || || |||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 30729 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | || || || ||| | ||||||| | | ||||| | |||| Sbjct 30730 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 30787 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||||||||| || Sbjct 30788 ACATTCAAAAAGAATCCAC 30806 >seq498 Length=39471 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| |||||| | ||||| ||| | ||||| | ||||| || Sbjct 34661 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 34720 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||| |||||||| |||||||| |||| ||| || |||||||| || || || ||| Sbjct 34721 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 34780 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 ||||| | | || | | || || || | ||||||| || || | |||||| Sbjct 34781 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC-CGATTA 34839 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||||||||| ||| | || || || Sbjct 34840 CAATATTCAAAAAGAATCAACATTACACTTGGT 34872 >seq730 Length=35671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 23994 CAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GA 24052 || || ||||| |||||| ||||||||||| | |||| ||| | || || | | || Sbjct 18687 CAGGTATTTGTGAAAACACTAACTGGAAAAAC-ATTAACATTGGAGACGGCTTCGAGTGA 18629 Query 24053 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACA 24112 || || || || | ||| |||||| ||||||||||| || ||||| |||||||| Sbjct 18628 TACAATTGACAAACTTAAATGTAAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACA 18569 Query 24113 GAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATAAC 24170 | || |||| | |||| |||| | ||||| | | | | |||| |||||| | Sbjct 18568 ACGCCTTATTTTTGCTGGCACGCAATTAGAAGAAGGACGTACCTTGTCA--GATTATTAT 18511 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || |||||||| | ||||||||| | || | ||| | | |||||| Sbjct 18510 ATCCAAAAAGAGTGCACAATTCATCTTGTACTTAGACTACGTGGAGGA 18463 >seq865 Length=39574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||| ||| || Sbjct 9963 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 10022 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| |||||||||||||| || || ||||| Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 10082 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | | ||| || ||| | ||||||| | | | |||| ||||| | Sbjct 10083 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCA--GATTACA 10140 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || || | ||| | ||| | | || ||||| || Sbjct 10141 ATATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429879750263925