Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2141 122 7e-23 seq498 113 4e-20 seq202 107 2e-18 seq865 100 2e-16 seq730 91.5 1e-13 >seq2141 Length=12878 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| || || ||||| || || ||| | ||| || || | Sbjct 4904 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 4963 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| ||||| ||| ||||||| || |||||||| | ||| || ||| Sbjct 4964 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 5023 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || ||||||||| | ||||| | ||| | | ||||||||| Sbjct 5024 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 5083 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| ||| | ||| | || | || | || ||||| Sbjct 5084 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 5130 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || |||||||||||||| | ||| ||||| | Sbjct 5360 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 5419 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| ||| ||| || |||||||| | ||| |||||| Sbjct 5420 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 5479 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | | || || || Sbjct 5480 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 5539 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||||||||||| || | ||| ||||| Sbjct 5540 ATTCAAAAAGAGTCAACACTTCATTTGGTG 5569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || ||||| || |||||||| ||| | || |||||| Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| |||||| ||||| || || ||||| || ||| Sbjct 5192 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 5251 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | |||| || || Sbjct 5252 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 5311 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 5312 ATTCAAAAAGAATCCACTCTTCAT 5335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || || || |||||| | || || || Sbjct 5588 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 5647 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| || || ||| |||||| |||||||| || |||| |||||| Sbjct 5648 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 5707 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| || || || ||||| ||||||| || | | ||||||||| Sbjct 5708 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 5767 Query 115466 ATTCAAAAAGAGTCTACT 115483 || |||||||| || ||| Sbjct 5768 ATCCAAAAAGAATCAACT 5785 >seq498 Length=39471 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||||| |||||||||||||| ||||| || || || ||||||||||| | ||| || Sbjct 34658 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 34717 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 ||||| || | | |||| ||| |||||||| ||||||||||| ||||| Sbjct 34718 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 34777 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| ||| | | || | ||| || ||||| |||||||||| | | ||||| Sbjct 34778 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGAT 34837 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 || || ||||||||||| || || |||| |||| Sbjct 34838 TACAATATTCAAAAAGAATCAACATTACACTTGGT 34872 >seq202 Length=70977 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || || || || |||||||||||| | ||| ||||||| Sbjct 30382 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 30441 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| ||||| ||| ||| ||| ||||| ||||| | || ||||| Sbjct 30442 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 30501 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || || | |||||||| Sbjct 30502 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 30561 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 30562 ATTCAAAAAGAATCAACTCTCCAT 30585 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || |||||||| || || ||||| || || | ||| |||||| Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||||||||| ||||| ||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 30729 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||||||||||| || || | || |||||| Sbjct 30730 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 30789 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 30790 ATTCAAAAAGAATCCACTCTCCAT 30813 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 30838 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 30897 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| || ||| ||||||||||| |||| ||||| Sbjct 30898 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 30957 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||||||||||| || || | |||||||| Sbjct 30958 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 31017 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 31018 ATTCAAAAAGAATCAACTCTCCAT 31041 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| |||||| | ||| |||||| Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||| ||||| | || |||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 31413 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || | | |||||||| Sbjct 31414 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 31473 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| |||||| | ||| Sbjct 31474 ATTCAAAAAGAATCTACTCTCCAT 31497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 31066 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 31125 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||| ||||| ||||| ||||| Sbjct 31126 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 31185 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| | || | | || ||||| Sbjct 31186 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 31245 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 |||||||| || || ||| | ||| Sbjct 31246 ATTCAAAAGGAATCAACTCTCCAT 31269 >seq865 Length=39574 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || || ||||| ||||| | ||| |||||| Sbjct 9963 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 10022 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| ||||| ||| || ||| || ||||||||| | ||| |||||| Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 10082 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||| ||||||| ||| || | ||||| || Sbjct 10083 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 10142 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||| ||||| ||| | ||| | ||| Sbjct 10143 ATCCAAAAGGAGTCAACTCTCCATCTCGTG 10172 >seq730 Length=35671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 115295 TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTT 115354 ||||| ||||| || || |||||||| | || | || |||| || || || || || Sbjct 18681 TTTGTGAAAACACTAACTGGAAAAACATTAACATTGGAGACGGCTTCGAGTGATACAATT 18622 Query 115355 GGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTT 115414 | || | ||| || ||| || |||||||| | || |||||| ||| | ||| Sbjct 18621 GACAAACTTAAATGTAAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTT 18562 Query 115415 ATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAA 115474 |||| ||| |||| ||||||||||| | ||| || | |||||| | || |||||| Sbjct 18561 ATTTTTGCTGGCACGCAATTAGAAGAAGGACGTACCTTGTCAGATTATTATATCCAAAAA 18502 Query 115475 GAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || || ||| | || | ||| | || ||||||| Sbjct 18501 GAGTGCACAATTCATCTTGTACTTAGACTACGTGGAGGAA 18462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425288351048200