Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2141 120 3e-22 seq865 116 3e-21 seq498 111 1e-19 seq202 98.7 9e-16 >seq2141 Length=12878 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || |||| ||| | || ||||| ||||||||||| ||||| Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 5071 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || ||||| ||| | || | ||| |||||||| || || Sbjct 5070 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 5011 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||||| | | || || | ||| |||| || || | Sbjct 5010 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 4952 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || ||||| || ||||| ||||| || ||||||| Sbjct 4951 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGA 4902 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || ||||| |||||||| ||||| || Sbjct 5586 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 5527 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || || || || ||| | || | ||| ||||| || || || Sbjct 5526 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 5467 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | ||| || | || || | ||||||| ||||| | Sbjct 5466 ATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 5408 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || ||||||||||| || ||||| ||||| Sbjct 5407 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 >seq865 Length=39574 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| ||||| | ||| | || ||||||||||| || |||||||| | Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | || || || || |||| || || ||||| ||||| || Sbjct 10129 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 10070 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || ||| |||| | || | || | ||||| | |||||| | Sbjct 10069 ATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| ||||| || |||||||| ||||| Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq498 Length=39471 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| ||||| || || || |||| || || || |||||||| ||||||||| Sbjct 34891 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 34832 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || || |||| ||| || || || | |||||||| || || ||||| || Sbjct 34831 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 34772 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || ||||| | |||| | || | |||||| | || | Sbjct 34771 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 34712 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||||||| || || ||||| || ||||| |||||| Sbjct 34711 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 34663 >seq202 Length=70977 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || ||||||||||| || || | Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || || ||| Sbjct 30776 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 30717 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | ||||| | | || || | ||||| | |||||| | Sbjct 30716 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 30658 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 30657 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || |||||||| || ||||| | Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || |||||| Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || ||| || | || || | ||||| | |||||||| Sbjct 30944 ATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACT 30885 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| || || || |||||||| ||||| Sbjct 30884 TCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || ||||||||||| || || || Sbjct 31292 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 31233 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || || || || || ||| Sbjct 31232 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 31173 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||||| Sbjct 31172 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 31114 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| ||||| || |||||||| ||||| Sbjct 31113 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || || |||||||| || ||||| Sbjct 31520 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 31461 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || ||||| || ||||| Sbjct 31460 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 31401 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||| | Sbjct 31400 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 31342 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||||| || || || |||||||| ||||| Sbjct 31341 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471949461782400