Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq498 159 2e-34 seq1409 140 2e-28 seq1347 140 2e-28 seq865 140 2e-28 seq301 140 2e-28 seq2141 116 2e-21 seq202 114 9e-21 seq475 105 4e-18 seq4 86.0 4e-12 seq730 84.2 1e-11 >seq498 Length=39471 Score = 159 bits (176), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||| | ||||| || | || || ||||||||||||||||| || Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 34831 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || ||||| ||||| || |||||||||| ||||||||||| | |||| Sbjct 34830 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 34771 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || |||||||| || || || | || ||||| | |||||||||| Sbjct 34770 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 34711 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| |||||||| || | ||||| || || || ||||||||| Sbjct 34710 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT 34660 >seq1409 Length=19301 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 19009 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 19068 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19069 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19103 >seq1347 Length=32214 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9732 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9791 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9792 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9826 >seq865 Length=39574 Score = 140 bits (154), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | ||| | ||| ||||| ||||||||| ||||||||||| | Sbjct 10191 TACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTG 10132 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| | || || |||||||| |||||||| || | |||||| ||||| | || Sbjct 10131 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 10072 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA---GTATCTCCACTTT 38265 | | ||||||||||| | | | | || |||| | | ||| || |||||| | Sbjct 10071 GAATGCCTTCTTTGT-CTTGAATCTTCGCTTTAACT--TGGTCAATGGTATCTGAGGACT 10015 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | |||||||||||||| || | || || ||||| || ||||| Sbjct 10014 CTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq301 Length=175246 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 51342 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 51283 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 51282 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 51248 >seq2141 Length=12878 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| || ||| |||||||||||||| |||| Sbjct 5588 TACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAG 5529 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| ||||| || || || ||||| ||||| | || Sbjct 5528 AAAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 5469 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||| ||| || || | | || ||||| | |||| Sbjct 5468 GAATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 5409 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || | ||||| || || || ||||| Sbjct 5408 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||| |||||||| || ||||| || | ||| |||| || | ||| Sbjct 5107 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTG 5048 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || || || || || ||||| || || | ||| | ||||||||||| |||||| Sbjct 5047 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 4988 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | || || | | | ||| || | ||||||||| | || || || || || || Sbjct 4987 TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGT 4928 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||| ||||| || |||||| || Sbjct 4927 AAGGGTTTTAACGAAGATTTGCATGATT 4900 >seq202 Length=70977 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| || ||||||||||| ||||| | Sbjct 30610 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTG 30551 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || |||||||| || || || |||| |||||||||||| | | Sbjct 30550 ACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 30491 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 | | ||||| || || ||| ||| || || | | | |||||| | || || Sbjct 30490 GAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGAC--TC 30433 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 30432 GACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| |||||| || |||||||| || || || | Sbjct 30838 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTG 30779 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || || || || | |||||||||||| | || Sbjct 30778 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 30719 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| ||| || || | | | ||||| || | Sbjct 30718 GGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTA 30659 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || |||||||| |||| ||||| ||||| || ||||| Sbjct 30658 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 107 bits (118), Expect = 1e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | || | ||||||||| ||| || ||||| |||||||||| Sbjct 30382 TACCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAG 30323 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT-CGGAG 38207 | || |||| |||| || || |||||||||||||| |||| ||||||||||| ||||| Sbjct 30322 ATAAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAG 30263 Query 38208 G 38208 | Sbjct 30262 G 30262 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| || ||||||||||| ||||| | Sbjct 31066 TACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTG 31007 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || || || || | |||||||||||| | | Sbjct 31006 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 30947 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| || || || | | | ||||| || | Sbjct 30946 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 30887 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 30886 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || | ||| ||||| |||||||||||||| || || | Sbjct 31294 TACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCG 31235 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| ||| | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 31234 ATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGG 31175 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| ||| || || | | | ||||| || | Sbjct 31174 GGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGA 31115 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| |||||||| || | || || ||||| || ||||| Sbjct 31114 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | ||| ||||| || ||||||||||| ||||| || Sbjct 31521 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 31462 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || |||||||| || || || || | |||||| ||||| | || Sbjct 31461 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 31402 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||| ||| || || | | | ||||| ||||| Sbjct 31401 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 31342 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 31341 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 >seq475 Length=47638 Score = 105 bits (116), Expect = 4e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 || |||||||||||||||| ||||||||||||||||||| |||||||||||||| || || Sbjct 23849 CTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGCTCGCTATCGGTCTCTCGCTA 23790 Query 20011 ATATTTAGCCTTA 20023 |||||||||||| Sbjct 23789 TTATTTAGCCTTA 23777 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| | Sbjct 32487 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGAACTTGTTCGCTATTGGTCTCTC 32428 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 32427 GCCGTTATTTAGCCTTA 32411 >seq4 Length=164413 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| |||||| |||| ||||||||||||||||||||| ||||| | Sbjct 56683 CTCTCTTTTCAAAGTATTTTTCATCTTTTTTTCACGGTACTTGTTCGCTATCAGTCTCTC 56742 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 56743 GCCGATATTTAGCCTTA 56759 >seq730 Length=35671 Score = 84.2 bits (92), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||| |||| ||| ||||| |||| ||||| ||||| |||| | || |||||||| Sbjct 18487 ATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAGGTACGTCCTTCTTCTAATTG 18546 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 | || ||||| || |||||||||||||| | || | |||||||||| ||||| Sbjct 18547 CGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTTGT-CATAA 18601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903377915785