Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq202 134 1e-26 seq865 129 5e-25 seq2141 125 6e-24 seq498 109 5e-19 seq730 98.7 9e-16 seq6 98.7 9e-16 seq1187 93.3 4e-14 seq1345 87.8 2e-12 >seq202 Length=70977 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||||||||| | ||||| | ||||| ||||| ||| Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 25059 GACACTATCGAGTCA-CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | ||||||| | ||| || |||||||| || || || || || Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCA-AGATAAAGAAGGTATCCCCCCAGATCA 30728 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || |||||||||||||||| ||| || || || || || Sbjct 30729 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 30788 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || ||| | || || | ||||||| || Sbjct 30789 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 30836 Score = 129 bits (142), Expect = 5e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || || ||| |||| || | ||||| ||||| | Sbjct 30382 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 30441 Query 25059 GACACTATCGAGTCA--CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || ||| | ||||||| | ||| || || ||||| ||||| || || | Sbjct 30442 GATACTATTGA-TCAAGTTAAAGCAAAGATTCA-AGATAAGGAAGGAATTCCTCCAGATC 30499 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||||| ||||||| || ||| || ||||| | Sbjct 30500 AACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATA 30559 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||| || || ||| | || || | ||||||| || Sbjct 30560 ATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 30608 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||||||| | || || | ||||| ||||| ||| Sbjct 30838 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 30897 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | || | || | ||| || |||||||| || || || || || Sbjct 30898 GATACCATAGATCAAGTAAAAACGAAGATTCAA-GATAAAGAAGGTATCCCTCCAGATCA 30956 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || |||||||||||||||| ||| || || ||||| || Sbjct 30957 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAA 31016 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| || || ||| | || || | ||||||| || Sbjct 31017 TATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 31064 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||||||| | || || | ||||| ||||| ||| Sbjct 31066 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 31125 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || ||| | ||||||| | ||| || || ||||| || || || || | Sbjct 31126 GATACCATAGA-TCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATCCCCCCAGATC 31183 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || ||||| |||||||| ||||||| || ||| | || || | Sbjct 31184 AACAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATA 31243 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || || ||| | || || | ||||||| || Sbjct 31244 ATATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGG 31292 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||||||| | || || | ||||| ||||| ||| Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | || ||||| | ||| || || ||||| ||||| || || || Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATTCCTCCAGATCA 31412 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||||| ||||||| ||| ||| | ||||| || Sbjct 31413 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 31472 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||| || || ||| | || || Sbjct 31473 TATTCAAAAAGAATCTACTCTCCATCTCGTACT 31505 >seq865 Length=39574 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||||||| | || || | ||||| ||||| || Sbjct 9963 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 10022 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | || || || | ||| ||||||||||| ||||| || || || Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGATTCAA-GACAAAGAAGGCATTCCCCCGGATCA 10081 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| |||||||| ||||||| || || || |||||||| Sbjct 10082 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 10141 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| || || || || ||| | ||||| | ||||||| || Sbjct 10142 TATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 10189 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | ||||| ||| | || || | ||||| || || ||| Sbjct 10191 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 10250 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | ||| |||| | ||| ||||||||||| || || || || || Sbjct 10251 GATACAATTGAACAAGTCAAGACAAAGATTCA-AGACAAAGAAGGTATCCCTCCAGATCA 10309 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACA 25144 ||| | | |||||||| |||||||| Sbjct 10310 ACAAAGATTGATTTTTGCTGGCAAACA 10336 >seq2141 Length=12878 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || | ||||| | ||||| || || || Sbjct 4904 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 4963 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | | || ||||||| ||| ||||||||||| ||||| || ||||| Sbjct 4964 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 5022 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||| | ||||| | ||| || | ||||| || Sbjct 5023 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 5082 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || ||| |||| || Sbjct 5083 CATTCAAAAAGAGTCAACTCTTCATCTAGTACT 5115 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| |||| || | ||||| ||||| || Sbjct 5360 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 5419 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | || ||||| | ||| ||||||||||| ||||| || || || Sbjct 5420 GATACCATCGATCAAGTAAAAGCAAAGATTCAA-GACAAAGAAGGTATTCCCCCAGATCA 5478 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| ||||| |||||| | || |||| || || | || ||||| Sbjct 5479 GCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAA 5538 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| || || || ||||| ||||| Sbjct 5539 TATTCAAAAAGAGTCAACACTTCATTTGGTGCT 5571 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | ||||| ||| ||||||| | || || ||||| || Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | || | |||| ||| || || || || || || || ||||| Sbjct 5192 GATACCATCGACCAAGTAAAAACCAAAATTCAA-GATAAGGAGGGTATCCCCCCAGACCA 5250 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| || || |||||| | || |||| || || | ||| ||||| Sbjct 5251 GCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAA 5310 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||| || ||| | || || Sbjct 5311 TATTCAAAAAGAATCCACTCTTCATCTCGTTCT 5343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || ||||| | || || | || || || || ||| Sbjct 5588 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 5647 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || ||| | || | |||| ||| || ||||| || || || || || | Sbjct 5648 GATACCATTGA-TCAGGTTAAAACCAAAATTCAA-GATAAAGAGGGTATCCCTCCAGATC 5705 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| || || || ||||| ||||||| ||| ||| | ||||| | Sbjct 5706 AGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATA 5765 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || ||||||||||| || || || Sbjct 5766 ACATCCAAAAAGAATCAACTCTTCA 5790 >seq498 Length=39471 Score = 109 bits (120), Expect = 5e-19 Identities = 160/220 (73%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA--GTCGT 25056 |||||||| ||||| || || | || |||||| |||| || | ||||| || || | Sbjct 34664 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 34723 Query 25057 CTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || ||||| |||| ||| ||||| ||| || |||||||| || || || Sbjct 34724 --GATACCATCGATAAAGTCA---AAGAAAAAATTCAA-GATAAAGAAGGAATCCCCCCG 34777 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCG 25170 || ||||| || | || ||||| || ||||| |||||||||| || |||| | || Sbjct 34778 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CG 34835 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||||||| || |||| || || || Sbjct 34836 ATTACAATATTCAAAAAGAATCAACATTACACTTGGTACT 34875 >seq730 Length=35671 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 |||||||||||| ||||| ||||| ||||| || |||||||||| |||| |||||||| Sbjct 18598 TGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTTATTTTTGCTGGCACGCAATTAGA 18539 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | || || || ||||| |||| |||||||| | ||| | ||| | || || Sbjct 18538 AGAAGGACGTACCTTGTCAGATTATTATATCCAAAAAGAGTGCACAATTCATCTTGTACT 18479 Query 25211 AAGGCTAAGAGGAGGAA 25227 || ||| | ||||||| Sbjct 18478 TAGACTACGTGGAGGAA 18462 >seq6 Length=229349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || || || || || || ||| | | ||| | ||||| |||| ||| || || || Sbjct 14173 GTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGA- 14115 Query 25071 TCACTGAAGCA-AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 ||| | || | |||||| ||||| |||||||| || ||||| || ||||| | | || Sbjct 14114 TCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAAT 14055 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 |||||| || || ||| | ||||||| || ||| | | ||||||||||| || Sbjct 14054 TTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGA 13995 Query 25190 ATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| |||| |||| || || Sbjct 13994 GTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 13959 >seq1187 Length=25818 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 25097 AGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 |||||| || || || || ||||| || | || | ||||| |||||| | |||||||| Sbjct 12081 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 12022 Query 25157 TCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||| | | ||||| ||||| ||| | ||||| || |||||||||| |||| | Sbjct 12021 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 11962 Query 25217 AAGAGGAGG 25225 |||||| || Sbjct 11961 AAGAGGTGG 11953 >seq1345 Length=28361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||||| || | | ||| ||| | | || | || || ||||||||| Sbjct 3438 ATGCAGGTATTTGTAAAAACACTAATCGGAAAAACGGTAACCTTGGAGGTAGAGTCGTCT 3497 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || | | | || | | | ||| || || ||||| ||| | ||||| | Sbjct 3498 GATACCATTAACCAAATTAAAGTCAGGATTCAA-GATAAGGAAGGAATTGCTCCTGATAA 3556 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||| || |||||||||||||||| || || || | ||||| || Sbjct 3557 ACAACGTCTTATTTTTGCTGGAAAACAATTAGAAGATGGGCGTACCTTGAGTGATTATAA 3616 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 ||| || ||||| ||| || ||| Sbjct 3617 TATCCAGAAAGAGAGCACACTTCAT 3641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271306479025