Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq202 150 4e-31 seq2141 147 5e-30 seq498 116 9e-21 seq865 114 3e-20 seq730 104 6e-17 seq1345 102 2e-16 >seq202 Length=70977 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | ||| ||||||||| || |||||||| | | || || || ||| Sbjct 30821 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 30762 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || |||||| |||||| || ||||||||| Sbjct 30761 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGA---TCTGGGGGGATACCTTCTTTA 30705 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | ||||| | ||| || |||||||| || ||||| Sbjct 30704 TCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATT 30645 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| || ||||| Sbjct 30644 GTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | ||| || || ||| Sbjct 31049 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 30990 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || |||||| ||||| ||| ||||||||| Sbjct 30989 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGA---TCTGGAGGGATACCTTCTTTA 30933 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||| ||| || | ||||| | ||| || || ||||| || || || Sbjct 30932 TCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATT 30873 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| || ||||| Sbjct 30872 GTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||||||||| | || ||| ||||| ||||||||||| | | || || || || Sbjct 31278 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 31219 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| |||||||| || |||||||||| || |||||| |||||| || ||||| || Sbjct 31218 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGA---TCTGGGGGGATACCTTCCTT 31162 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || | ||||| | ||| || || ||||| || || || Sbjct 31161 ATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAAT 31102 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||||||||| || ||||| Sbjct 31101 TGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | || || || ||| Sbjct 30593 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 30534 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || |||||||| | || |||||| ||||| |||||||| ||| Sbjct 30533 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGA---TCTGGAGGAATTCCTTCCTTA 30477 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | || |||| ||| | || || ||||| || || || Sbjct 30476 TCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATG 30417 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| Sbjct 30416 GTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||||||||| | || ||||||||| |||||||| || Sbjct 31523 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 31464 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || ||||| |||||||| || |||||||||| || || ||| ||| Sbjct 31463 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGA---TCT 31407 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| ||||| || || || ||||| || | ||||| | ||| || Sbjct 31406 GGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGAC 31347 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 31346 TCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| || || || | || |||| ||| ||||| |||||| Sbjct 30063 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 30004 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 30003 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 29960 >seq2141 Length=12878 Score = 147 bits (162), Expect = 5e-30 Identities = 177/238 (74%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| |||||| ||||||| || |||||||| || ||||| || | Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 5071 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| || ||||| || || |||||| Sbjct 5070 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG---TCTGGG 5014 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| ||||| || | || |||| ||| ||||| Sbjct 5013 GGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCA 4954 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||||| || ||||| ||||| ||||| || || || ||||| || ||||| | ||||| Sbjct 4953 ACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTA 4896 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| |||| || |||||||||||| ||||| || Sbjct 5817 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 5758 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||| ||||| || || ||||| |||| ||| || || |||| Sbjct 5757 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTG---ATCT 5701 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || |||||||| || ||||| | ||| || | || || | ||| ||| Sbjct 5700 GGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGAT 5641 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || || || || || || || ||||| Sbjct 5640 TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 >seq498 Length=39471 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | |||||| | || | || ||||||||| ||||| || |||| Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 34831 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||||| |||||||| ||||| || || || || | ||| |||||| ||| Sbjct 34830 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 34771 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||| || || || || | |||||| ||| ||| Sbjct 34770 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 34711 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || || || || ||||| Sbjct 34710 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 34664 >seq865 Length=39574 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||||||||| || || | | || ||||| ||| Sbjct 10174 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 10115 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || || ||||||| || || || ||| ||| || |||||||| Sbjct 10114 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTG---ATCCGGGGGAATGCCTTCTTTG 10058 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||||||| || | || || | ||| || |||||||| || || || Sbjct 10057 TCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATA 9998 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| || ||||| Sbjct 9997 GTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq730 Length=35671 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || ||||||||||| |||||||| |||| ||||||||||||| | Sbjct 18456 CAAACAT-TCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAA 18514 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || ||||| ||||||||||| | || || || || || || |||||| Sbjct 18515 TAATCTGACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGA 18574 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 | || ||||||||||| || | || || ||| | || || || | ||| ||| Sbjct 18575 TCAGGAGGAATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCACTC 18634 Query 288418 GA 288419 || Sbjct 18635 GA 18636 >seq1345 Length=28361 Score = 102 bits (112), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||||||||||| ||||| ||||| ||||||||||| || | || || || |||| Sbjct 3648 GTACGAGATGAAGTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCCCATCTT 3589 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 ||||||||||||| || || || ||||| |||| | | | |||||||| ||||| | Sbjct 3588 CTAATTGTTTTCCAGCAAAAATAAGACGTTGTTTATCAGGAGCAATTCCTTCCTTATCTT 3529 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 | || | |||| | | | || | ||| ||| ||||| || | || | ||| | Sbjct 3528 GAATCCTGACTTTAATTTGGTTAATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTT 3469 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| | || || || || |||| |||||| Sbjct 3468 TTCCGATTAGTGTTTTTACAAATACCTGCAT 3438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179492147753330