Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2141 149 6e-31 seq865 102 8e-17 seq498 102 8e-17 seq202 98.7 1e-15 seq730 89.7 5e-13 seq1702 84.2 2e-11 >seq2141 Length=12878 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||| |||||||||| || || |||||||||||||| ||||||| Sbjct 5131 ACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGA 5072 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||||||||| || ||||| || |||| || || |||||||| || || Sbjct 5071 AAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGG 5012 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| ||||| | |||||||||| || || | || || | || | Sbjct 5011 AATTCCTTCTTTGTCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 4953 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 4952 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || || ||||||||||| ||||| || | | ||| || | || Sbjct 5572 AAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATC 5513 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| || || ||||| ||||||| || ||||| || || ||||| |||||||| || Sbjct 5512 CTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTC 5453 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||||| || | ||||| | || ||||| | ||| | ||| Sbjct 5452 TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGT 5393 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||| || ||||||||||| Sbjct 5392 TTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||||| || |||||||||||||| ||||| || | Sbjct 5359 ACCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGA 5300 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||| || || || || ||||||| || |||||||| || || Sbjct 5299 AAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 5240 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| || | ||||| || || || Sbjct 5239 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 5180 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| |||||||| | || |||||||| |||||||| Sbjct 5179 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||||||||| ||||| ||||| | | || || | ||| Sbjct 5799 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 5740 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || |||| | || ||||| || ||||| || || ||||| ||| Sbjct 5739 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 5680 Query 64352 TGTATTTTTTGCTTTACAACC---TCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || | ||||| ||| |||| || | |||||| | || || || | || | Sbjct 5679 TGAA--TTTTGGTTT-TAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATC 5623 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | |||||||| ||||||||||| Sbjct 5622 GTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 >seq865 Length=39574 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || ||||| || |||||||||| | ||| || | ||| Sbjct 10174 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 10115 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || |||||| | || | || ||||| || || ||||| |||||||| ||| Sbjct 10114 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 10055 Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| | || | ||||| || || ||||| | ||| | || Sbjct 10054 TGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGT 9996 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || |||||||||||||| Sbjct 9995 TTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq498 Length=39471 Score = 102 bits (112), Expect = 8e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| || | ||| || | || | || |||||||||||||| |||||||| | Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 34831 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | | || | ||||| | ||| || || ||| | || | || || || || || || Sbjct 34830 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 34771 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||||| || || || | ||||| | || ||| Sbjct 34770 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 34711 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAA 64451 |||| ||| | ||| || || || | ||||| || ||||||||||| ||||| || Sbjct 34710 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAAA 34655 >seq202 Length=70977 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||||||||| || |||| | || || | ||| Sbjct 30821 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 30762 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || || || || |||||||| ||| Sbjct 30761 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 30702 Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| |||||| | || | |||||| || || ||||| | ||| | || Sbjct 30701 TGAATCTTT-GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGT 30643 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| ||||| |||||||||||||| Sbjct 30642 TTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || ||| | ||| Sbjct 30593 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 30534 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || |||||||||||||| || ||| Sbjct 30533 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 30474 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || || | |||||| || || ||||| | || | ||| Sbjct 30473 TG-AATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGT 30415 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| |||||||| Sbjct 30414 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||||||||| || ||||| | | || || | || Sbjct 31506 AAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATC 31447 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | || ||||| || |||||||| ||||| || || Sbjct 31446 TTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC 31387 Query 64351 TTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| || ||| |||||| | || | |||||| || || ||||| | || | | Sbjct 31386 TTGAATCTTT-GCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTG 31328 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | || || |||||||||||||| Sbjct 31327 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || || | ||| Sbjct 31049 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 30990 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || ||||| || |||||||| ||| Sbjct 30989 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 30930 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || | |||||| || || ||||| | ||| | || Sbjct 30929 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 30870 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || |||||||||||||| Sbjct 30869 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| |||||||| || || || | | || || | || Sbjct 31278 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 31219 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || ||||| | || | || || || || || || || ||||| || || Sbjct 31218 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC 31159 Query 64351 TTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| || ||| |||||| | || | |||||| || || ||||| | ||| | | Sbjct 31158 TTGAATCTTT-GCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 31100 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | ||| || |||||||||||||| Sbjct 31099 TTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 >seq730 Length=35671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | |||||| || |||||||| || | |||||||| || | ||||||| Sbjct 18464 CCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGAC 18523 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | ||| |||| ||| |||| || || || || || |||||| Sbjct 18524 AAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 18583 Query 64337 ATTCCTTCTTTTTC 64350 ||||||||||| || Sbjct 18584 ATTCCTTCTTTGTC 18597 >seq1702 Length=19207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 |||||||| || || |||| ||| || | || |||| ||||| |||| |||||| Sbjct 13211 GCCAAGTTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAA 13270 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 ||||| ||| || || || || |||| ||||| ||||| || || | |||||| Sbjct 13271 TTACTACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTG 13330 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG 154755 || | || || || || |||||||| | |||| ||||| ||||| Sbjct 13331 TAGAGCATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTG 13376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499577753913400