Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03-
16] 10,735 sequences; 122,873,294 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2141 84.2 2e-11
seq865 84.2 2e-11
>seq2141
Length=12878
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||| | ||| ||| ||||| ||||||||||| || || || || |
Sbjct 5575 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 5516
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || || || || |||||||| || | || ||||| || | || | | || ||
Sbjct 5515 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 5456
Query 46498 GTCCATGATCTT--CTT---CTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552
||| ||||| ||| ||||| || | || ||| || || || ||||
Sbjct 5455 GTCTTGAATCTTTGCTTTTACTTGATCG-----ATGGTATCGGAAGACTCAACTTCCAAA 5401
Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || || ||||||||||| ||||||||
Sbjct 5400 GTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360
>seq865
Length=39574
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||||||||| | ||| ||||| | || |||||||||||||||||| || ||
Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || | || || ||||| || |||||||| ||||| || | ||
Sbjct 10129 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 10070
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| || || ||||| |||||| ||| | | | | | | || || || || ||
Sbjct 10069 ATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | || || ||||| || || || || ||||| || ||||||||
Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565162552072200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |