Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2141 113 3e-20 seq202 86.0 4e-12 >seq2141 Length=12878 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| |||| || Sbjct 5568 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 5509 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || |||||||| ||| | || | || || ||||| | Sbjct 5508 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 5449 Query 34893 ATCTT--CTGTT---TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || ||| |||| ||||| || ||||| || | || |||| Sbjct 5448 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGAC-----TCAACTTCCAAAGTAATGG 5394 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || ||||| || ||||| || |||||| Sbjct 5393 TTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 5359 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| |||||| ||||| || ||||| |||||| ||||| |||| || || ||| Sbjct 5334 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 5275 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || || || || || |||||||||||| | || | |||||||| || ||| || Sbjct 5274 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 5215 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||| || | || | || || ||| || || | ||| |||||||| || ||| Sbjct 5214 GTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTG 5155 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || ||||| |||||| Sbjct 5154 AGTGTCTTTACGAAGATTTGCATA 5131 >seq202 Length=70977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| ||||||||||| | | || |||| |||| ||||| ||||| || Sbjct 31257 TTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAA 31198 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-G 34908 || | ||||| || ||| | || | || ||||| || |||||| ||| || | Sbjct 31197 GATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTG 31138 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| | ||| || ||| || || | || || ||||| || ||||||||||| | Sbjct 31137 AT-CTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGA 31079 Query 34969 CAAAGATCTGCATA 34982 | || || |||||| Sbjct 31078 CGAAAATTTGCATA 31065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324591127273080