Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1702 338 7e-88 seq717 277 2e-69 seq114 127 2e-24 >seq1702 Length=19207 Score = 338 bits (374), Expect = 7e-88 Identities = 673/991 (68%), Gaps = 37/991 (4%) Strand=Plus/Plus Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA-CACA 48177 ||||||| ||||||||| || | |||| ||| |||||| |||| ||| || | Sbjct 13514 TAACTTC--AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAA 13571 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | || ||||| |||| || || || ||||||| | ||| | | |||||| | Sbjct 13572 TAAACT-CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTG 13630 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||||||||| | | | |||||| || ||| |||| |||| | || | || Sbjct 13631 CATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAA 13690 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | || |||| |||||| | ||||||||| || || | | || || ||||| | Sbjct 13691 AATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGT 13750 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | |||||||| || | |||||| || ||||| |||||||| | |||||| || | ||| | Sbjct 13751 TTCCTCCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTC 13810 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 ||||||| |||||| ||||| | ||||||| ||| | || | || ||| ||| Sbjct 13811 CATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGT 13870 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| ||||||||||| | ||||| || | || || ||| | |||||||| | Sbjct 13871 TCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGA 13930 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 |||| ||||| ||||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 13931 TTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAG 13990 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | |||||| || || |||||||| ||| |||| | || ||||| | || | Sbjct 13991 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 14050 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||||||| ||| || ||||| | || || || | | ||| ||||| | Sbjct 14051 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 14110 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| || | || ||| ||| | |||| |||||||| ||| |||| | Sbjct 14111 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 14170 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||||| |||||||| || ||| | | | |||||| ||| || | ||||| | Sbjct 14171 GAGTTTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAA 14230 Query 48838 TTCTTTCCTTA-TGTTTATATACTACATCCATTACATTTTT-TGATATAATTGA------ 48889 | ||||| | |||| || || | || || | ||||| || || ||||| Sbjct 14231 GTTTTTCCGAATTGTTCAT-CACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCG 14288 Query 48890 -TTCC--------------------TTGTAAAGATCTTCTACAACATCACTAAATAtttt 48928 |||| || ||||||||||| ||||||| ||| | ||| Sbjct 14289 TTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTT 14348 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||||||||||||||||||| | || || | |||||| | | ||||| || || Sbjct 14349 TTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGG 14408 Query 48989 ATGAATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 ||| | || || ||| ||| | ||||||| || || |||||||||| ||| Sbjct 14409 ATGTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 14467 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTT 49078 | |||||| ||| | |||| ||| || || Sbjct 14468 TAACACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 149 bits (164), Expect = 7e-31 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 ||| ||||||||||||||||| |||| || || | || || || || || ||||| Sbjct 12490 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 12549 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| | | |||||||| || || ||||| | ||| ||||| |||||||| | ||| Sbjct 12550 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 12609 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 | ||||| ||||| ||| |||| || | ||| | |||||||| Sbjct 12610 GAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATC 12669 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 ||| | ||| | || |||||||||| | ||| ||||| | ||| ||||| | ||| Sbjct 12670 CCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGG 12729 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | ||| | | ||| || ||| || || | |||||||| |||||| || Sbjct 12730 TGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAA 12789 Query 47615 TGCACTATAATATATTGTTTCAAATATTT 47643 ||||| || ||| ||||| |||||||||| Sbjct 12790 TGCACCATGATACATTGTCTCAAATATTT 12818 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 || ||||||||||||||||| || | | | | ||||| | |||||||||||||||| | Sbjct 12154 TACAAATGCATACTAGTTAACTTTGCTTTAGTCGGTTCCGCAATATGAATATTAAGACTT 12213 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||| ||||||||||| ||||| | ||| || |||||||| | |||||| |||| | | Sbjct 12214 TGAGATTGATCAATAAAAGCACCACGATCGGCCGCCATATCAATAATAACTTTTTGCGAT 12273 Query 47178 ATCTCCCATACTGTTTTATA 47197 || |||||| |||||||| Sbjct 12274 ATTTCCCATGTAGTTTTATA 12293 Score = 102 bits (112), Expect = 9e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | | ||||||| || | ||||||||||| || |||| Sbjct 13178 TTATTTTCAACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCC 13237 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 || | | ||||| | || || | ||| | ||||| ||||||||| ||||| | |||| Sbjct 13238 GGGCTCGAATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTT 13297 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || |||||| ||||| | || ||||| |||||| | ||||| || ||||| Sbjct 13298 TGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCG 13357 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAAC 48064 ||||| ||||||| || | | |||| || Sbjct 13358 ATCTGGGATTCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 277 bits (306), Expect = 2e-69 Identities = 374/518 (72%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| ||||| ||||||||| || | || | ||||||||||||||| ||||| || | Sbjct 5116 TCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTT 5057 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 ||| || | |||||||||||||| ||||| | | |||||| | |||| | Sbjct 5056 GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCAC 4997 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | | | | || || |||||| |||||||||| ||||||| | ||||| | || | Sbjct 4996 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGT 4937 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || ||||| ||||| |||| ||| ||||| | ||||||||||||||| | || | Sbjct 4936 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 4877 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG--GTATA-GAAGATGTTTAA 18952 | || | |||||||| | | || | || | ||||| || | ||||||| | | Sbjct 4876 CTTCCGCTATAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGA 4820 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | | |||||||||||||||||| | ||| || |||| | || | ||| || |||| Sbjct 4819 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4760 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||| || ||||||| ||||||||| |||||||| || || || || || | ||||| Sbjct 4759 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4700 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||||||| ||||| || || ||||| || || || | ||| || | || || | Sbjct 4699 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCT 4640 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTT 19170 ||| ||||||| || |||||||| || || ||| Sbjct 4639 TATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 4602 Score = 192 bits (212), Expect = 7e-44 Identities = 230/306 (75%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||| | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||||||||| ||||||||||||||||||| || || |||||| ||| ||| | ||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||||||||| || || ||||| || ||||| || || || || || |||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 19405 A--AATGTTT-TTCATC-TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 | ||| ||| |||||| | | ||| || | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTCTTCATCGTTAAGTTTAT-ACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT-CAC 19519 ||||| ||||| |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4170 Query 19520 GATATT 19525 ||||| Sbjct 4169 AATATT 4164 >seq114 Length=70618 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||||||| |||| | | || ||| ||||| |||||||| || || || | | Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| || |||||| ||||||| |||| ||||||| || | || ||||| |||||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | | ||| ||||| | ||| || || ||||| |||||||| ||||| | ||| Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 48729 GGTCTTTCAACAA 48741 ||||||||||||| Sbjct 58077 GGTCTTTCAACAA 58065 Score = 102 bits (112), Expect = 9e-17 Identities = 244/369 (66%), Gaps = 18/369 (5%) Strand=Plus/Minus Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTAT 47383 ||||||||| ||| || ||| ||| || ||| ||||| ||||| |||||||| | Sbjct 59947 TTGAAATTCCCCACTTAATAC---ACGTCTTTGATAAATATTGCTTGTGTATGGTTCAAA 59891 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||| ||||||| ||| ||| || ||||| || ||||| | ||||| || || Sbjct 59890 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 59831 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 |||||||||||||||| |||| | ||| ||||| |||| Sbjct 59830 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 59771 Query 47504 TGA---TGGAACAACATT---CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGA 47557 ||| | | || | | ||| || || || ||||| || |||||||| ||||| || Sbjct 59770 TGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGGGA 59711 Query 47558 ACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCA---A 47614 ||| | |||||| |||||||| | | ||| | |||||| || ||| | | Sbjct 59710 ACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGAGA 59651 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| || ||||| |||||||| || | | ||| || || | ||||| ||||| Sbjct 59650 TGC---ATGATATAAAGTTTCAAAAATATCTCGGTTAAGCTTACGCGCTTCATCAGATTC 59594 Query 47675 AAAAGGATA 47683 | ||||| Sbjct 59593 CCATGGATA 59585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033372025400