Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2141 127 2e-24 seq865 98.7 8e-16 seq202 87.8 1e-12 >seq2141 Length=12878 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || |||||||||||||||||| ||||| || |||| Sbjct 5577 AGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGT 5518 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || |||||||| || || || || || ||||| | ||||| || || Sbjct 5517 CCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCT 5458 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | | | || || | ||| || |||| ||| Sbjct 5457 TTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTA 5398 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||| |||||||| ||||| Sbjct 5397 ATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || || ||||| || ||| | ||| | || ||||| |||||||| || || Sbjct 5778 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 5719 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTA-CAGA 48694 |||| || || ||||| | || | ||||| || || ||| ||| |||||| | Sbjct 5718 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAAT-TTTGGTTTTAACCTG 5660 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || | || ||||| | |||||||| || || || | |||||||| Sbjct 5659 ATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTAC 5600 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 5599 AAAAATTTGCAT 5588 >seq865 Length=39574 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||| | ||| || || ||| ||||| ||||||||||| || Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||| || ||||||||||| |||| || || ||||||| |||| Sbjct 10129 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 10070 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| ||| || | | | ||||| | ||| || Sbjct 10069 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 10010 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | ||| || || ||||| ||||| Sbjct 10009 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq202 Length=70977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || || |||| | | || | || ||||| || |||||||| || Sbjct 31256 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 31197 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | ||| | || ||||| || ||||||| ||| || | Sbjct 31196 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 31137 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | ||||| ||||| || || | ||| || || Sbjct 31136 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACG 31077 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 31076 AAAATTTGCAT 31066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| |||| | | ||| | || ||||| || ||||| || || Sbjct 31484 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 31425 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || || ||||| | |||| || ||||| || ||||||| ||| || Sbjct 31424 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 31365 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | ||||| ||||| || || | || || || Sbjct 31364 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 31305 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 31304 AAAATTTGCAT 31294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887760862405