Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2141 89.7 4e-13 seq202 86.0 5e-12 >seq2141 Length=12878 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || || || ||| ||| ||| |||| Sbjct 4904 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 4963 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||||| || |||||||| ||| | ||| ||| || Sbjct 4964 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 5022 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||| || || ||||||||| | ||||| | || | | |||||||| Sbjct 5023 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 5082 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||| || ||||| || | ||| | || | || ||||| || Sbjct 5083 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGTAT 5133 >seq202 Length=70977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || |||||||| || || ||| || | || Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||| | || || ||||| || | ||| |||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAAGAAGGTATCCCCCCAGATCA 30728 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || || |||||||| |||||| | || || | || ||||| Sbjct 30729 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 30788 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| ||||| || | ||| | | ||| |||| || || Sbjct 30789 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 30839 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || |||||||| |||||| ||| || | || Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||| | || || || || || | || |||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATTCCTCCAGATCA 31412 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | | ||||| || || ||||||||||||||| | ||| | | |||||||| Sbjct 31413 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 31472 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||||||||| || Sbjct 31473 TATTCAAAAAGAATCTACTCTCCA 31496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425349143093565