Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1702 168 3e-37 >seq1702 Length=19207 Score = 168 bits (186), Expect = 3e-37 Identities = 348/512 (68%), Gaps = 8/512 (2%) Strand=Plus/Plus Query 25898 AATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 |||||| ||||| | ||||| ||||| | | |||||| | ||| | || ||| | | Sbjct 13570 AATAAACTCCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGT 13629 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 |||||||||||||| | || | | |||||||||||| ||| ||||||| ||| | Sbjct 13630 GCATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATA 13689 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 ||||||||||| || | ||||| | ||||||||| |||||||| || | ||| Sbjct 13690 AAATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTG 13749 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 ||| ||||| || || ||||| || || | ||| |||| ||||| |||| | | Sbjct 13750 TTTCCTCCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATT 13809 Query 26138 CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA 26197 ||| ||||| | || ||||| | | ||| | |||||||||| | ||| | ||| Sbjct 13810 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 13869 Query 26198 TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGAAACTGTATCGA 26255 | | ||| || ||||| || || ||||| ||| || | | ||| ||||| Sbjct 13870 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAA--GTATCAT 13927 Query 26256 AAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAAT 26315 | ||||| | ||| |||| ||||||| ||| | ||||||| || | ||| | Sbjct 13928 AGATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTC 13987 Query 26316 GAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAAAG 26375 || ||| || | |||||| || ||||| | || |||||| || | ||| || | | Sbjct 13988 TAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTA-AAGA-ACTTTTCTGACAT 14045 Query 26376 CTG--TATAAGTTTCAAGAACTTCATCGATAT 26405 | | | |||||||||| | | | ||||||| Sbjct 14046 CAGATTGTAAGTTTCAATAGCAGCTTCGATAT 14077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253006894065125