Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5 199 5e-46 >seq5 Length=157215 Score = 199 bits (220), Expect = 5e-46 Identities = 223/298 (75%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 47850 ATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTC 47909 ||||||||||||||| ||||| ||||| ||||||| || || || | ||||| || Sbjct 130999 ATAATCTCTGGCATGACCCCAATCACGTTTGGCATCAACGTTACCAAGCCACAAACATTC 130940 Query 47910 TTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTC 47969 ||| ||||| || ||| | || || | || ||||||||||||||| || || Sbjct 130939 TTGTTTACCCAAGGAAATTTCAGCTACAGCACGTGAAATCTTACGAGTTACGAATGTACG 130880 Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 |||||| | ||||||||||||||||| | || || |||| ||| |||| ||| | Sbjct 130879 ACCACGACGAGGAGATTCATGATTAAATAAAACGCCGTTACAAGCAAACATATTGTAGGC 130820 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 ||||||||| || |||| ||||||| | || | ||| ||||| |||||||| ||||| Sbjct 130819 TTCACGATAATTAGTTACAATCCAGTGTGCGTACAATTTGGCAACTCCATAAGGTGAACG 130760 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 ||||||||||||||||| |||| || || || || || ||||||||||||||| Sbjct 130759 AGGATAGAAAGGTGTGGTTTCTGATTGAGGTGTTTCAACGACTTTACCATAAAGTTCA 130702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665405098970200