Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1702 149 2e-30 seq148 96.9 1e-14 seq75 95.1 4e-14 seq268 91.5 4e-13 seq1 86.0 2e-11 >seq1702 Length=19207 Score = 149 bits (164), Expect = 2e-30 Identities = 303/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || || ||||| | ||| || ||||| | || | || |||||||||||| Sbjct 13750 TTTCCTCCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATT 13809 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||| ||||| ||||| ||||| || || | | |||| |||||||| Sbjct 13810 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 13869 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||||||||||| |||||||| |||||| || | ||||| | Sbjct 13870 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAG 13929 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA---CGAACTTAATTGAGGT 156296 || || || || |||||||||| ||| | || ||| | || |||| | ||||||| Sbjct 13930 ATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAA---AGTTGAGGT 13986 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 | ||||| ||||| || || | || || | ||| ||| |||| |||| | ||||| Sbjct 13987 CTAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATC 14046 Query 156357 TAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 || ||| || || || | || || | || | |||||||| | | | || | Sbjct 14047 AGATTGTAAGTTTCAATAGCAGCT--TCGATATCATCTCCGTGAATCCCAACCGCTACGC 14104 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474 ||| |||||| || |||||||| ||| |||| | ||||| | ||| || | | Sbjct 14105 GCATAAGCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATC 14164 Query 156475 GTTCCAGAGTTTTAAACCCGAAATAAT 156501 ||| ||||||||||| || ||||||| Sbjct 14165 TTTCAAGAGTTTTAAATCCAAAATAAT 14191 >seq148 Length=94477 Score = 96.9 bits (106), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG 380965 ||||| || ||||||||||||| ||| ||||| | || | ||| | | | | Sbjct 50106 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 50165 Query 380966 TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATA 381025 | | || ||| | ||||||||| |||||| | ||| ||| ||| ||| | ||| Sbjct 50166 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 50225 Query 381026 ACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATT 381085 |||||| ||| | |||||| |||| ||||| || |||||||||||| || || | Sbjct 50226 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 50285 Query 381086 ATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCA 381128 | | |||| |||| ||||| |||||||| ||||| || || Sbjct 50286 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCA 50328 Score = 91.5 bits (100), Expect = 4e-13 Identities = 222/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 381223 ATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTA 381282 ||||| |||||||| || ||||| || ||||| ||| |||| || | || | ||| Sbjct 50491 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 50550 Query 381283 AGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCT 381342 ||| | | ||||| | |||||||||| || ||||| ||||| || ||||| Sbjct 50551 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 50610 Query 381343 TCGTATTCTATGCTTACTCGTTTAATTGCTCATCACACTGGACTAATTGCGGGTGATTTT 381402 ||| |||| | |||| | | ||||||||| || || | | | ||||| ||| Sbjct 50611 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 50670 Query 381403 GTTTATTATCTCGGTAATACTCATATATACGACGACCATATTGAGAATTTAAAAGTTCAA 381462 || || | ||| ||||||||||||| | || |||||| | ||||||| |||| Sbjct 50671 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 50730 Query 381463 A-AAACCAGGACACCATATGCGTTTCCAACGTTAGA----TATACTAAATACTTACGATA 381517 | | | || |||| | || ||||| |||| || || || || | ||| ||| Sbjct 50731 ATCGAACGTGA-ACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAA-AATTA--ATA 50785 Query 381518 ATATTGAAGATTACACGGTTGATGATTTTA 381547 ||||||| |||| | ||||||||||| Sbjct 50786 ATATTGATGATTTTAAATATGATGATTTTA 50815 >seq75 Length=97770 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || ||| || ||||| | || || || || || ||||||||| | Sbjct 27545 AATTTCTTTAAGACGTGGTACACCGAGAGTAACATTT---TTACTCGATACACCAGCATA 27489 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||| ||||| | ||||||| || ||||||||| |||||| |||| | Sbjct 27488 ATGGAAAGTATTTAGAGTCATCTGAGTAGCCGGTTCACCAATAGATTGTGCGGCAACAGT 27429 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| ||||| Sbjct 27428 ACCAACCATTTCACCTGG 27411 >seq268 Length=96288 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||||| |||||||| || ||||| || || ||||| ||| | | |||| | Sbjct 35194 ATTGTCATACGACTAGGAATAGCGTGTGGATTTATAATAATGTCAGGTGTAATACCATTA 35135 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGA 251964 |||| || |||||||| | || | | | || ||||||| ||||| || || || ||| Sbjct 35134 GCAGCAAATGGCATATCTTCTTGATGATAAGTGATTCCAATTGTTCCTTTCTGACCATGA 35075 Query 251965 CGAGAACTGAACTTATCACCAAT 251987 ||| ||| ||||| ||||| Sbjct 35074 CGACTCGCGAATTTATCTCCAAT 35052 >seq1 Length=170712 Score = 86.0 bits (94), Expect = 2e-11 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| ||| |||| || |||||||| || | || || | ||| || | | || | | Sbjct 135137 CCTTGATTTTCCAATTGCGTCAATTTCATCCACAAATATTATACAAGGTGCGTGTTTTTT 135196 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| ||||||| || || | ||| | || | |||| ||||||| ||||||| ||||| Sbjct 135197 CGCGTTTGCAAACAAATCACGTACTCTAGACGGACCAACACCAACAAACATTTCAACAAA 135256 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| | ||||| ||| ||||| || || || | || || Sbjct 135257 TTCAGATCCTGATACACTTAAGAATGGGACACCAGCTTCACCCGCAGTAGCTTTTGCAAG 135316 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| || || || || || ||| | | || ||||||| ||| || || Sbjct 135317 CAAAGTTTTACCGGTACCTGGAGGACCACTTAAAATGGCACCTTTTGGTATTTTAGCACC 135376 Query 289260 AGCAGACTTATATTTCTCAG--GGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATA 289316 || ||| | | ||| || ||||| || |||| |||| |||| | ||| | Sbjct 135377 --CAATCTT-TCATAAGCAGTCGGATCTTTCAAGAATTTAACAAATTCCATTATTTCCTC 135433 Query 289317 TTTTGCCTCATCACAT-CCTGCTACATC 289343 ||| || ||||| ||| || |||||||| Sbjct 135434 TTTGGCTTCATC-CATACCAGCTACATC 135460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471615162987695