Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq148 143 3e-29 seq198 84.2 3e-11 >seq148 Length=94477 Score = 143 bits (158), Expect = 3e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 ||||| | |||||| ||||||||||| || || ||||| |||| || | |||| Sbjct 50106 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 50165 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 || | ||||| | | ||||||||||||||||| ||| ||| | ||| | | | | Sbjct 50166 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 50225 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 |||||||||||||||| || || |||||||||| |||||||||||| || ||| | | Sbjct 50226 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 50285 Query 172579 ATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAA 172622 | || || || ||||| |||||||| || |||| || || ||| Sbjct 50286 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAA 50329 >seq198 Length=58905 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 194239 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGGTAT 194297 ||||| ||| |||| |||||||||| ||| | |||| |||||||| || ||||| Sbjct 53297 ATACCAGAATTAGGAGATAAATTTTCTTCACGTCATGGA-CAAAAAGGTGTATGCGGTAT 53239 Query 194298 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 194357 ||| |||||||||||||||||||| | ||| ||||| || |||||||| || Sbjct 53238 TATTGTACCACAAGAAGATATGCCATTTGCTGATTCTGGTATATGTCCTGATATTATCAT 53179 Query 194358 CAATCCAAATTGTATTCCGTCCAGAATGAC 194387 |||||| || | |||| || | ||||| Sbjct 53178 GAATCCACATGGATTTCCTTCACGTATGAC 53149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632404727801800