Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq202 105 4e-18 seq2141 98.7 6e-16 >seq202 Length=70977 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| ||||||||||||| | || |||| |||| ||| || ||||||||| Sbjct 31256 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 31197 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGAC-GGA 34905 |||| ||||| || ||| | || | || ||||| || | || ||| ||| || || Sbjct 31196 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 31137 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | ||| || |||||| |||| || || || || || ||||| ||||| || Sbjct 31136 T-CTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGAC 31078 Query 34966 AAAGATCTGCAT 34977 || || ||||| Sbjct 31077 GAAAATTTGCAT 31066 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| ||||| ||||||| | || |||| |||| ||| || || |||||| Sbjct 31484 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 31425 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| |||||||| ||| | || | || ||||| || | || ||| ||| || Sbjct 31424 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 31365 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | ||| || ||| || |||| ||| || || || || ||||||||||| || Sbjct 31364 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 31305 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 31304 AAAATTTGCAT 31294 >seq2141 Length=12878 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| || || ||||| || ||||| || ||| | || |||| Sbjct 5343 AGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCC 5284 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || ||||| || || |||||||||||| | || | |||||||| || Sbjct 5283 TCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT 5224 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | || | || || ||| || || | ||| ||||| Sbjct 5223 TGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTT 5164 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| |||||||| ||||| ||||| Sbjct 5163 TTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || ||||||||||| || || ||| | || | || || ||||| || || ||||| Sbjct 5095 CTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAA 5036 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || |||||||||||| | || | || || ||||| | |||||| ||| || Sbjct 5035 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTG 4976 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | || || |||| ||| || |||||||| || ||||| || || Sbjct 4975 GTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAAC 4916 Query 34966 AAAGATCTGCATGATAGT 34983 ||||| |||||||| || Sbjct 4915 GAAGATTTGCATGATTGT 4898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325650188694965