Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq202 150 3e-31 seq498 125 1e-23 seq865 122 1e-22 seq6 114 2e-20 seq1187 109 9e-19 seq398 104 4e-17 seq2141 102 1e-16 seq1933 96.9 5e-15 seq446 87.8 3e-12 >seq202 Length=70977 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 30839 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 30898 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| || || ||| ||||||||| || || || ||||||| Sbjct 30899 ATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAAC 30958 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | ||||| |||||||||||| Sbjct 30959 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATA 31018 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 31019 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 31066 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| ||||| |||| || || || | Sbjct 30383 TGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATG 30442 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | | || ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 30443 ATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 30502 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || |||||||||||| Sbjct 30503 AACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATA 30562 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 30563 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 30610 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||| ||| |||| ||||| | Sbjct 30611 TGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTG 30670 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||||||||| || || || ||||||| Sbjct 30671 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAAC 30730 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | || || |||| ||||| | Sbjct 30731 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACA 30790 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 30791 TTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 30838 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 31067 TGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 31126 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| || || || ||||||| Sbjct 31127 ATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAAC 31186 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | || ||||||| Sbjct 31187 AACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATA 31246 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 31247 TTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTA 31294 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||||||||| |||| || || | Sbjct 31295 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTG 31354 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| ||||| || ||||| | Sbjct 31355 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGC 31414 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | | || ||| | |||||||||| Sbjct 31415 AACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATA 31474 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| ||||| | ||| | || | | || ||| |||| Sbjct 31475 TTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 31526 >seq498 Length=39471 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| |||||| | || || ||| || || Sbjct 34665 TGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCG 34724 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| | ||||| ||| ||||||||| || || || ||||||| Sbjct 34725 ATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAAC 34784 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACA----GATTAT 146207 || | | || ||||| |||||||| ||||| ||| | ||||| || ||||| Sbjct 34785 AACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT----GGACGTTCACTTTCCGATTAC 34840 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| ||||||||||| || | || || ||| | || ||| | || || Sbjct 34841 AATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 34890 >seq865 Length=39574 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || ||||| |||||| |||| ||||| | | | Sbjct 9964 TGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA- 10022 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || ||| || || ||| |||||||||||||| || ||||| Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 10082 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | || || ||||||| ||| Sbjct 10083 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 10142 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || ||| ||||| | || | || |||||||| |||| Sbjct 10143 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTA 10191 >seq6 Length=229349 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||||||||| |||||||| | || ||||| || || || ||||| ||| | | Sbjct 14170 AAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGATCAA 14111 Query 146106 GTAAAAAATAAAATACAACTTAAA--GAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||||| ||||| ||| ||| ||||| || ||||| |||||||||||| | |||| Sbjct 14110 TTAAAAACAAAAATT--ACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAATTT 14053 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 |||| ||||| ||| | || ||| | || |||| ||||| |||||| || | Sbjct 14052 TTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGAGT 13993 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || | |||||||||||| ||||||| || || Sbjct 13992 CCACGCTACATTTAGTATTAAGATTAAGGGGTGG 13959 >seq1187 Length=25818 Score = 109 bits (120), Expect = 9e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 146129 AGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAA 146188 |||||| || || || ||||||||| | | || | || ||||||||| | || ||| | Sbjct 12081 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 12022 Query 146189 TAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | | || ||| |||||||||||||||| | ||||| ||| | |||||||||||| |||| Sbjct 12021 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 11962 Query 146249 AAGAGGAGGT 146258 |||||| ||| Sbjct 11961 AAGAGGTGGT 11952 >seq398 Length=62543 Score = 104 bits (114), Expect = 4e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||||||| | ||||| ||||| || ||||| || || | || || | || ||| Sbjct 56982 CAAATATTCGTTAAAACGTTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 57041 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | || ||||| | ||||| || ||||||||| || || || ||||||||| Sbjct 57042 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 57101 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||| | ||||||| |||| | | || ||| | |||||| | ||||| || ||| Sbjct 57102 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 57161 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 ||||| | || || || ||| | ||||| || ||| || ||| Sbjct 57162 AAAAAACATTCCACAATACATCTGGTATTGAGACTAATTGGTGGT 57206 >seq2141 Length=12878 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 5589 TGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT- 5647 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || |||| ||||| ||| |||||| || || || || ||||| Sbjct 5648 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 5707 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || ||||| ||||| || ||| | | || | | |||||||| Sbjct 5708 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 5767 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||||||||| ||| Sbjct 5768 ATCCAAAAAGAATCAACT 5785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||| | || || ||||| || || | || ||||| | Sbjct 5133 TGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGG 5192 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| ||||| ||| ||| || || || || || || || | Sbjct 5193 ATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGC 5252 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||| | || ||| |||| | | || || |||| Sbjct 5253 AACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATA 5312 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| | ||| Sbjct 5313 TTCAAAAAGAATCCACTCTTCAT 5335 >seq1933 Length=16258 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || | ||||| ||| || ||||||||| | ||||| || || |||| Sbjct 3790 CAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCCGAT 3849 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || | || ||||| | ||| ||| ||||||||||| ||| || |||| ||| Sbjct 3850 ACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAGCAA 3909 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | || ||||| ||||||||| | || ||||| || || ||| |||||||||| Sbjct 3910 CGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAATATT 3969 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||| ||| | ||| | || | || ||||||| |||| Sbjct 3970 AGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGGTA 4015 >seq446 Length=157017 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATA 146094 |||| || | |||||||| || ||||||||| ||| | ||| | || | ||| | Sbjct 26052 AAATTTTTGTGAAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGCGACA 26111 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 ||||| | | | ||| ||| | | |||||||||||||| || || || ||| Sbjct 26112 CTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGCAAC 26171 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 | | |||||||| ||||| ||||| || ||| | ||| ||| |||||| |||||| | Sbjct 26172 GTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTGTAATATTC 26231 Query 146215 AAAAAGAATCGACTATCCATTTAGTA 146240 || |||| || || | ||| | ||| Sbjct 26232 AAGAAGAGTCTACGTTGCATCTTGTA 26257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786060906296200