Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2141 149 5e-31 seq202 147 2e-30 seq498 134 1e-26 seq865 132 4e-26 seq398 95.1 9e-15 seq1933 89.7 4e-13 >seq2141 Length=12878 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| || || |||||||||||||||||||| | || ||| ||| Sbjct 5118 CGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCG 5059 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||||||||| | || | | |||||| || || ||||| || |||||| Sbjct 5058 TCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTG 4999 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||||| ||| || || | |||||| ||| ||| |||||||| || || Sbjct 4998 TCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGAT 4940 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||||||||| || || ||||| Sbjct 4939 TGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || ||||||||||| || || || | || ||| || Sbjct 5575 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 5516 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | || | | ||||||||| || |||||||| ||||| Sbjct 5515 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 5456 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| ||| || || | || || ||| || ||||| | ||| | Sbjct 5455 GTCTTG-AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAA 5397 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||||| ||||||||||| || ||||| Sbjct 5396 TGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || ||||||||||| ||||||||||||| || || ||| Sbjct 5803 ACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACC 5744 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | ||||| | ||||||||| || || ||||||||||| Sbjct 5743 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTT 5684 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || ||||| ||| || ||||| || | Sbjct 5683 ATCTTG-AATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAA 5625 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||||| ||||| || ||||| Sbjct 5624 TCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| ||||||||||||||||| || || || | || ||| || Sbjct 5347 ACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCC 5288 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | | |||||| || || || |||||||| || Sbjct 5287 ATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTT 5228 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || || || ||||| || | || | Sbjct 5227 ATCTTG-AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGA 5169 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || | || || || || || ||||| Sbjct 5168 TGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 >seq202 Length=70977 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || || ||||| || || | ||| || ||||||||||||||||||||||| || | | Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | ||| ||| || | |||||| ||||| | ||||| | ||| ||||| || || Sbjct 30776 AATG-TACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 30718 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| ||||| ||||| ||| |||| ||| || |||| || ||||| |||| Sbjct 30717 GATACCTTCTTTATCTTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTA 30659 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| || ||||| || || | |||||||| || || ||||| Sbjct 30658 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || |||| | ||| || || | ||| || || |||||||||||||| |||||||| Sbjct 31524 TTGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATC 31465 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 || | || ||| ||| || | |||||| ||||| | ||||| | ||||||||| || Sbjct 31464 CGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGG 31405 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 |||||||| || || ||||| ||| |||| ||| || |||| || ||||| | Sbjct 31404 AGGAATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACT 31346 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || ||||| || || | ||| || || || || ||||| Sbjct 31345 CAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || |||||||||||||| |||||||| | Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | |||||| ||||| | ||||| | ||| ||||| || || Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| ||| || |||| || |||| || ||||| || || Sbjct 30944 ATACCTTCTTTATCTTG-AATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 30886 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || ||||| || || | ||| || || || || ||||| Sbjct 30885 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || |||||||||||||| |||||||| | Sbjct 30608 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 30549 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| ||||| | || || | ||| ||||| || ||| Sbjct 30548 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 30489 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| |||| ||| || || | ||| ||| || || Sbjct 30488 ATTCCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 30430 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| ||||| | ||| || || ||||| ||||| Sbjct 30429 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || ||||| |||||||| ||||| |||| Sbjct 31292 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 31233 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| || || | ||||| | ||| ||||| || || Sbjct 31232 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 31173 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || || ||||| ||| |||| ||| || |||| || ||||| || || Sbjct 31172 ATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 31114 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || ||||| || || | || || || || || ||||| Sbjct 31113 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 >seq498 Length=39471 Score = 134 bits (148), Expect = 1e-26 Identities = 166/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || ||||| || | || |||||||||||||| || ||||| | || | || Sbjct 34881 AAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGT 34822 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||| |||||| |||| || | ||| |||||||| || || || ||| Sbjct 34821 CCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCT 34762 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||| | ||||| |||||| | || | || || | ||| ||||| | ||| Sbjct 34761 TTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTA 34702 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 || ||||| ||||| | ||||||||||| || ||||| ||||||| Sbjct 34701 ATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAA 34656 >seq865 Length=39574 Score = 132 bits (146), Expect = 4e-26 Identities = 119/147 (81%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 |||||||||||| | ||||||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 10336 TGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTG-AAT 10278 Query 29701 TTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||||| ||||| ||| | || |||||| ||| ||||||||||| |||||||| || Sbjct 10277 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 10218 Query 29760 AGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| |||||||| Sbjct 10217 GGTGAGGGTCTTTACAAAAATCTGCAT 10191 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| ||||| | ||| || || || || ||||| || || ||||| | Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | |||||| || ||| | ||||| | |||||||||||| ||| Sbjct 10129 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 10070 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | ||| || || | || || || ||||| Sbjct 10069 ATGCCTTCTTTGTCTTG-AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| |||||||| || || | || ||||| || || ||||| Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq398 Length=62543 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||| | ||||| | ||||| || || ||||||| | || || ||| || Sbjct 57187 ACCAGATGTATTGTGGAATGTTTTTTTATCTTGTAATCCGATAACGTACGGCCATCTTCA 57128 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||| | |||||| | | |||||||| ||||| || || || || ||||| || || Sbjct 57127 AGTAACATACCAGCAAAAACTAATCTTTGTTGATCTGGAGGTATCCCTTCTTTATCCTGA 57068 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGT--CAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 | ||||| ||| | | || || | ||| || || | || ||| || |||||||||| Sbjct 57067 ATTTTTTCTTTTA--GGTTATAAATTGTATCACTAAAATTTAATTCTAGTGTTATAGTTT 57010 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTG 29783 | |||||||| |||||||| ||||| || Sbjct 57009 TACCAGTTAACGTTTTAACGAATATTTG 56982 >seq1933 Length=16258 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||| | |||||| || |||| | ||| ||||||| | Sbjct 4013 CCACCTCTTAGACGGAGCACGAGATGAAGAGTTGATTTATCCCTAATATTATAATGTGTC 3954 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| |||||| | ||||| | |||||||| || ||| Sbjct 3953 AAAGTATGTTTATCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGA 3894 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || ||||| ||||| | | | | ||| || || || || || || || ||| Sbjct 3893 GTGCCTTCTTTATCTTGAATTATGTTTTTCACTTCTTTAACTGTATCGGAGGCATCAACT 3834 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || ||||||||| ||| ||||||||||| || || || Sbjct 3833 TCAATGGCAATTGTTTTGCCACTTACAGTTTTAACAAAAATTTGTAT 3787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385168800688635