Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq148 152 7e-32 seq198 93.3 5e-14 seq174 82.4 1e-10 >seq148 Length=94477 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | |||||| |||| |||||| || || ||||| |||| || | |||| Sbjct 50106 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 50165 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 || | ||||| ||| ||||||||||||||||| ||| ||| | ||| | | | | Sbjct 50166 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 50225 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 168705 |||||||||||||||| ||||| |||||||||| |||||||||||| || ||| | | Sbjct 50226 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 50285 Query 168706 ATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | ||||| || ||||| |||||||| || |||| || || ||| Sbjct 50286 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAA 50329 >seq198 Length=58905 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193501 ||||| ||| |||| |||||||||| |||| | |||| | ||||||| || ||||| Sbjct 53297 ATACCAGAATTAGGAGATAAATTTTCTTCACGTCATGGAC-AAAAAGGTGTATGCGGTAT 53239 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTAT 193561 ||| |||||||||||||||||||| | | ||| ||||| || |||||||| || Sbjct 53238 TATTGTACCACAAGAAGATATGCCATTTGCTGATTCTGGTATATGTCCTGATATTATCAT 53179 Query 193562 TAATCCAAATTGTATTCCATCCAGAATGAC 193591 |||||| || | |||| || | ||||| Sbjct 53178 GAATCCACATGGATTTCCTTCACGTATGAC 53149 >seq174 Length=105385 Score = 82.4 bits (90), Expect = 1e-10 Identities = 161/231 (70%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 192952 ATTATCCACAAAAACCCCTTGTTACCACA-GAT-ATTGCAAAATTTAATAAATTAGACGA 193009 |||||||||||||||| | || || ||| || | || || ||||| | || | | Sbjct 44178 ATTATCCACAAAAACCTGTAGTAACAACAAGAGCAATGGAATTTTTAAGAT-TTCGTGAA 44236 Query 193010 TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGA 193069 ||| ||| ||| |||||||||||||| || ||| |||| |||||| |||||||| Sbjct 44237 TTA-CCAGCAGGTCAAAATGCTATTGTTGCCATTCTTTGTTATAGTGGTTACAATCAAGA 44295 Query 193070 AGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAACTTA 193129 ||| | ||||| | ||| || | |||||| ||||| |||||| | | ||| ||| Sbjct 44296 AGATTCTGTTATTATGAATCAAAGTAGTATTGATAGAGGTTTATTTAGGAGTATTTTTTA 44355 Query 193130 TAATACATATACAGTTGAAGAAACAAAAAATGGAATTATAGAAGAAAAAAT 193180 | | |||| | | |||||| | ||| ||| | || ||||||||| Sbjct 44356 CAGAAGTTATATGGATCAAGAAA-AGAAAGTGGTA----AGTAGAAAAAAT 44401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092367105800