Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq148 100 4e-16 seq198 89.7 7e-13 >seq148 Length=94477 Score = 100 bits (110), Expect = 4e-16 Identities = 188/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 180418 TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGA 180477 |||| | |||||||||||||| | || |||||| |||||| || |||| || Sbjct 50098 TATTATAGAAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGA 50157 Query 180478 TATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTC--TTGTGGA 180535 | ||| || | | ||| | | ||||||||| ||| | | ||| ||| ||| || Sbjct 50158 AAAAGGTATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTG-GGC 50216 Query 180536 TTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCA 180595 | ||| | |||||||||||||||| || || |||||||||| |||||||||||| Sbjct 50217 TATCACATA-GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTT 50275 Query 180596 GGAGCTCAATATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATT--AA 180653 || ||| | || ||||| || ||||| | || | || ||||| | || ||| | || Sbjct 50276 GGTGCTGAGTACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAACTGCAA 50335 Query 180654 GCCAAGTTATAGAAACTATAAAAAATAATCC 180684 | | || || || | || ||||||| ||| Sbjct 50336 G--AGGTCATCGATAAAATTAAAAATACTCC 50364 >seq198 Length=58905 Score = 89.7 bits (98), Expect = 7e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 201544 TTAAAATTGTTATTGGTCAGATACGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA- 201602 ||||||| | || | || | | | ||||||||| | ||||||||||||| ||| | Sbjct 53323 TTAAAATATTAATAAGACAAACAAGAATACCAGAATTAGGAGATAAATTTTCTTCACGTC 53264 Query 201603 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAA 201662 |||| | ||||||| || ||||| ||| |||||||||||||||| ||| | | Sbjct 53263 ATGGAC-AAAAAGGTGTATGCGGTATTATTGTACCACAAGAAGATATGCCATTTGCTGAT 53205 Query 201663 TCGGGTATGACCCCGGATATTATAATCAATCCAAATTGTATACCATCAAGAATGACCATA 201722 || ||||| || |||||||| || |||||| || | | || ||| | ||||| || Sbjct 53204 TCTGGTATATGTCCTGATATTATCATGAATCCACATGGATTTCCTTCACGTATGACTGTA 53145 Query 201723 AATCAAATAATTG 201735 | |||| |||| Sbjct 53144 GGTAAAATGATTG 53132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655192069615000