Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2141 123 2e-23 seq202 123 2e-23 seq865 122 9e-23 seq498 109 5e-19 seq1933 87.8 2e-12 >seq2141 Length=12878 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | || | |||| ||||| || || |||||||| ||||| ||||| | Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATC--TG 5073 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | | ||| |||||| |||||||| ||||| | || ||||||||||| || || | Sbjct 5072 AAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGG 5013 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| ||||||| ||| | || || | ||||| | | ||| | Sbjct 5012 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 4953 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 4952 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| | ||||| || ||||||||||| || ||||| ||| Sbjct 5358 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 5299 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || || |||||||||||||| | || ||||||||||| || || || Sbjct 5298 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 5240 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || |||||| ||||| || || | || || | || ||||| Sbjct 5239 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 5180 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | || |||||||| | ||| |||||||| ||||||||| || Sbjct 5179 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCATACCT 5128 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || ||||||||||| ||||| ||||| | || | ||||| | ||| Sbjct 5790 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 5731 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 |||||||| | |||| |||||||||||| ||||| || || ||||| || |||||| Sbjct 5730 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 5671 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | ||| || | || || | | ||| || |||| || | |||||| || || Sbjct 5670 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 5611 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | ||||||||| || ||||||||| Sbjct 5610 AGTGTTTTTACAAAAATTTGCATA 5587 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| ||| || |||||||| || ||||| || Sbjct 5586 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 5527 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || || ||||||||||| || | || |||||||||||||| || || Sbjct 5526 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 5468 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| ||| ||||| || || | || || | | || || Sbjct 5467 AATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 5408 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || || | ||||| || || ||||||||| Sbjct 5407 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 5359 >seq202 Length=70977 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | || | ||| | || ||||||||||| ||||| || || | Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | |||||||||||| |||||| ||||| ||||| || || Sbjct 30776 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 30717 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||| ||| ||| | || || | || || | || |||||| Sbjct 30716 ATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACT 30657 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | || || ||||||| ||||| ||||| ||||||||| Sbjct 30656 TCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 30609 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | || | ||| | || ||||||||||| || || ||||| | Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | |||||||||||| |||||| ||||| ||||| ||||| Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||| || ||||| || || | || || | || || ||| Sbjct 30944 ATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACT 30885 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | || || ||||| | || || ||||| ||||||||| Sbjct 30884 TCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 30837 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | || | ||| | || ||||||||||| || || ||||| | Sbjct 30608 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 30549 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| | |||||||||||| |||| | ||||| ||||| ||||| Sbjct 30548 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 30489 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| ||| | || || | || || ||| || ||| Sbjct 30488 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACT 30429 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | || || || || | || || ||||||||||||||| Sbjct 30428 TCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 30381 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || | ||| | |||||||||||||| || || ||||| Sbjct 31523 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 31464 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | || | ||||| | |||||||||||| |||||| ||||||||||| ||| Sbjct 31463 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGA 31404 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| || || ||| ||| ||| | || || | || || | || || Sbjct 31403 GGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCA 31344 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||||| || | || || ||||| | || || ||||| ||||||||| Sbjct 31343 ACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 31293 >seq865 Length=39574 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | || | ||| | || || || ||||| || |||||||| | Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| | ||||||||| ||| |||||| ||||||||||| || || Sbjct 10129 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 10071 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||| || ||| | || || | || |||| || ||||| Sbjct 10070 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 10011 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | || || ||||| | || || ||||| ||||||||| Sbjct 10010 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 9962 >seq498 Length=39471 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||||||| | || || || | ||| ||||||||||| || ||||||||| Sbjct 34891 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 34832 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || | Sbjct 34831 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 34773 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || |||||||| || |||||||| ||| | | || | || || | ||| | Sbjct 34772 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 34713 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | ||| | || || || || | |||||| || || |||||||| Sbjct 34712 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 34664 >seq1933 Length=16258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| ||||||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 3941 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 3882 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || |||| | | ||| | | || || || || | || || ||||||| | | Sbjct 3881 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCGGAGGCATCAACTTCAATGGCAATT 3822 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| | | ||||| || || ||||| ||| Sbjct 3821 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488478443502000