Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1702 179 9e-40 seq717 118 3e-21 seq75 95.1 3e-14 seq101 93.3 1e-13 seq12 89.7 1e-12 >seq1702 Length=19207 Score = 179 bits (198), Expect = 9e-40 Identities = 406/606 (67%), Gaps = 7/606 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| || |||||||||||| | ||||| | | || | ||| | | Sbjct 14189 TATTTTGGATTTAAAACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCC 14130 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || ||||| ||||| ||| || | || || ||| |||| ||||| ||| ||||||| || Sbjct 14129 GAGCGTCCCCAACATATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAA 14070 Query 110424 GCTGTTATTGAATGTTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 |||| ||||||| ||| || | || | || ||||| || ||| || |||| | Sbjct 14069 GCTGCTATTGAAACTTACAATCTGATGTCAG--AAAAGTTCTTTACTCACGCATCTCCGA 14012 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | | ||||| || || || | || ||| | | ||| |||||| || || | Sbjct 14011 CTTTGTTTAATGCTGGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGA 13952 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | |||||||| || || || || |||||| || | ||| | || | |||||||| | Sbjct 13951 AAGATGATTCAATAGAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGA 13892 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | || || |||||| | || ||||| | ||||| | | |||| | |||| || Sbjct 13891 CTGCAGGTGGTATTGGTGTGAACATTCATAACATTCGTGCGACAGGATCTTATATTGCTG 13832 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | | || ||| ||||| |||| || |||| |||||| | || | || | || || | Sbjct 13831 GAACAAATGGTTATTCAAATGGAATTATTCCTATGTTACGCGTTTATAATAATACCGCTA 13772 Query 110722 AATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| | ||||| || || | | | ||| | |||||||| ||| | ||| | | Sbjct 13771 GATATGTTGACCAAGGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGT 13712 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| | || || ||||| || | || | |||||| ||| |||||| Sbjct 13711 GGCATCCTGACATTTTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTC 13652 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||||| ||||||||||||||| | ||| |||| ||| | || |||||| | ||| || Sbjct 13651 GTGCACGGGATTTATTTTATGCACTTTGGGTTTCGGATCTTTTTATGAAAAGGGTTGAAT 13592 Query 110899 AAAATG 110904 ||||| Sbjct 13591 CAAATG 13586 >seq717 Length=48811 Score = 118 bits (130), Expect = 3e-21 Identities = 329/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 131800 AAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAG 131859 ||| ||||| || |||||| || ||||||| ||| | || ||| || | | Sbjct 4602 AAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACG 4661 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 |||||||| ||||| ||||||||| ||||||||||| || |||||| | ||||| Sbjct 4662 TCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTT 4721 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | ||||| | ||| ||||||| ||| | | || ||||| || | || || | Sbjct 4722 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 4781 Query 131980 AGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCTGATAA 132036 |||||||| ||||||| ||| ||||| | | ||| || | | || | | | Sbjct 4782 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACT--CATCTTCGTGCACGA 4839 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 || | |||| | | | || ||||| ||||| ||| || || | || || Sbjct 4840 CCTCCAACAAAA-ACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 4898 Query 132097 TATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTA 132156 | | |||||||| || || ||||| ||||| ||||| || | | ||||| | || Sbjct 4899 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 4958 Query 132157 CATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATT-TATAACA 132215 |||||||| || |||||| | ||| | |||||| | ||| ||| ||||| Sbjct 4959 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGG-TGGAGCAAAATTGTATAATT 5017 Query 132216 CCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCG 132275 | | || || | | | ||||| | |||| | |||||||||| || ||||| | Sbjct 5018 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTG 5077 Query 132276 AAAGTCGTGTATCTGAGTA 132294 ||| || ||||| || || Sbjct 5078 AAAAACGCGTATCAGATTA 5096 >seq75 Length=97770 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 304894 TCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCATCTCAAAGA 304951 |||| |||||| | ||||||||||| || ||||| || | || |||| |||| | Sbjct 24981 TCATTGTGCAACTTATATGGATAATGAGATGGCTGGTCAACCA--CAAGCATTACAAAAA 25038 Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| ||||||||||| || || ||| | || |||||||| || ||| |||| Sbjct 25039 TCTGGTAGACCTTTAAAATCAATCAGAGCACGTCTCAAGGGTAAAGAAGGACGTCTTCGT 25098 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCT 305071 || ||||||||||| |||||||| || ||| ||| | | || || || ||| | Sbjct 25099 GGAAATCTAATGGGTAAACGTGTAGACTTTTCTGCTCGTACAGTCATTACGGGAGATCCG 25158 Query 305072 CAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCA 305131 | || | ||||| | |||||||||| || |||| ||| |||| ||||| Sbjct 25159 AATATATCAGTAGATGAAGTTGGAGTTCCAAAAAGTATAGCTTCAAATTTAACTTTTCCT 25218 Query 305132 GAGAAAGT 305139 || | ||| Sbjct 25219 GAAATAGT 25226 >seq101 Length=189299 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 138945 ACTTTTCGTTTTAATGAATGTGTTTGTAGTCCTTATAATGCAGATTTTGATGGTGATGAA 138886 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | |||||||||||| Sbjct 138885 ATGAATCTTCATGTACCTCAA 138865 >seq12 Length=128094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 |||||| | ||||| ||||||||||| || || ||| |||| |||||| ||| || Sbjct 112128 GGTATTGCTAAACTGGATGATGCAAATAATGCCGGCGGTAAAAAATGTCAAGATTGTACT 112187 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| | |||||||| || |||||||| | || || |||| || || ||| | || Sbjct 112188 TTAATCCTTACTGAAGGCGATTCTGCAAAGGCTTTGGCAGTTGCCGGATTTTCTATAGTT 112247 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 |||||||| || ||||| || || || | | || ||| || | |||| | | ||| Sbjct 112248 GGTCGTGACAATTATGGAGTTTTCCCGCTTCGTGGGAAATTATTAAATGTTAGGGAT 112304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186649563171335