Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq865 129 4e-25 seq2141 125 5e-24 seq498 107 1e-18 seq202 93.3 3e-14 >seq865 Length=39574 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | ||| | ||| ||||| ||| ||||| || |||||||| || Sbjct 10190 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 10131 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || ||||||||||| |||||||| ||||| || |||||||| | || Sbjct 10130 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 10071 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| ||| | || ||| | ||| | ||| || || || | Sbjct 10070 AATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 10012 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 10011 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 9962 >seq2141 Length=12878 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| ||||| ||||| || || || || | || |||||||| || || || ||| Sbjct 5778 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 5719 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||| ||||||||| | || | ||| ||||| || |||||| |||| ||| | Sbjct 5718 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG-GTTTTAACCTG 5660 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| ||| || |||||| || |||| || ||||| ||||| || | |||||||| Sbjct 5659 ATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTAC 5600 Query 33738 AAAGATCTGCATA 33750 ||| || |||||| Sbjct 5599 AAAAATTTGCATA 5587 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||||||||| || ||||| || || Sbjct 5587 ACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGA 5528 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | |||||| ||||| ||||| | ||| ||||||||| | || Sbjct 5527 AAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 5468 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || || || || | || | ||| ||| || || | Sbjct 5467 AATACCTTCTTTGTCTTGAATCTT-TGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 5409 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || |||| ||||| ||||| || |||||| Sbjct 5408 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 5359 Score = 114 bits (126), Expect = 8e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||||||||| ||||| ||||| || || || || |||| || | ||| Sbjct 5107 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTG 5048 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || ||||| | ||| ||||| ||| | || | ||||||||||| |||||| Sbjct 5047 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 4988 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || || ||| | ||| | |||||| ||||| || |||| ||||| || || || | Sbjct 4987 -TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGG 4929 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || ||||| ||||| Sbjct 4928 TAAGGGTTTTAACGAAGATTTGCAT 4904 >seq498 Length=39471 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | ||||| |||| || |||||||| || ||||||||||| Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 34831 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||| ||| | || || || ||||| || ||||| || ||||| || ||||| | || Sbjct 34830 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 34771 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | |||||||| || |||||| | ||| | || | ||| ||||| ||| || Sbjct 34770 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 34711 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 34710 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 34664 >seq202 Length=70977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || | ||| ||||| || ||||| || || || || || Sbjct 31293 ACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGA 31234 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| ||||| || ||||| || || |||||| | || Sbjct 31233 TAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGG 31174 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || || ||| | || | ||| || || || | Sbjct 31173 GATACCTTCCTTATCTTGAATCTT-TGCTTTAACTTGATCTATGGTATCAGAGGACTCGA 31115 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 31114 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCATA 31065 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| ||||| |||||||| || || ||||| || Sbjct 31521 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 31462 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || || ||||| || ||||||||| | || Sbjct 31461 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 31402 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || || ||| | ||| | ||| || || || | Sbjct 31401 AATACCTTCCTTATCTTGAATCTT-TGCTTTAACTTGGTCTATGGTATCAGAGGACTCAA 31343 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 31342 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 31293 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | || | ||| ||||| |||||| || ||||||||||| || Sbjct 30381 ACCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGA 30322 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | | ||| |||| ||||| |||||||||||||| || || || || ||||| Sbjct 30321 TAAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATC 30268 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || | ||| ||||| |||||||| || || ||||| || Sbjct 30609 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 30550 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || || || || || || |||||| | || Sbjct 30549 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGG 30490 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || || ||| | || | || || | || || | Sbjct 30489 AATTCCTTCCTTATCTTGAATCTT-TGCTTTAACTTGATCAATAGTATCATTGGACTCGA 30431 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || | || || || || || |||||| Sbjct 30430 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 30381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328660994731200