Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2141 109 1e-18 seq865 107 5e-18 seq498 93.3 1e-13 seq202 93.3 1e-13 >seq2141 Length=12878 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| | ||||| ||| ||| ||||| | || | Sbjct 4919 AAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGACACTATTGACCAA 4978 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| ||| | ||||| || Sbjct 4979 GTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAACGTCTTATTTT 5037 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || | ||||| || | || | | ||||| ||| | || |||||||| Sbjct 5038 CGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATTCAAAAAGAGTC 5097 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || | ||||||| Sbjct 5098 AACTCTTCATCTAGTACTTCGACTTCG 5124 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||||||||||| || ||| || || |||| | Sbjct 5375 AAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGATACCATCGATCAA 5434 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||||||| |||||||| ||| || || ||| | || || ||| Sbjct 5435 GTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAACGTCTCATTTTC 5494 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | || |||||| | || | | || ||||| | || |||||||| Sbjct 5495 GCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATTCAAAAAGAGTCA 5554 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 5555 ACACTTCA 5562 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || ||||| || | || || ||| ||||| || | || ||| Sbjct 5603 AAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGATACCATTGA-TCA 5661 Query 206245 G--TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | |||| | ||| |||||||| ||||| || || || || ||| | | || | Sbjct 5662 GGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAACGTTTGATTT 5720 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || ||||| ||||||||||| | ||| | | ||||| ||| |||| ||||| | Sbjct 5721 TCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATCCAAAAAGAAT 5780 Query 206363 CTACTCTTCACCTTGT 206378 | ||||||||||| || Sbjct 5781 CAACTCTTCACCTCGT 5796 >seq865 Length=39574 Score = 107 bits (118), Expect = 5e-18 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||| |||||||| |||| ||||||||| | |||||| | ||||||||| Sbjct 9944 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 9885 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| || || |||||||| | ||||| ||| Sbjct 9884 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGA 9851 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || ||| | ||||| || || || || | || | Sbjct 9978 AAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGATACCATTGACCAA 10037 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| ||||| ||| | | ||||| Sbjct 10038 GTTAAAGCGAA-GATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAACGCTTGATCTT 10096 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || |||||||||||| | || ||| | |||||||| |||| || ||||| Sbjct 10097 TGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAATATCCAAAAGGAGTC 10156 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 10157 AACTCTCCATCTCGT 10171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| ||||||||||| | |||||| |||| || || |||| ||| Sbjct 9864 ATCTTCGCTGGTAAACAGCTGGAAGATGGACGTACTTTGTCCGACTATAATATCCAAAAA 9923 Query 206359 GAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||||||| Sbjct 9924 GAGTCAACTCTTCACCTTGTT 9944 >seq498 Length=39471 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||| ||||| |||||| || || |||| | Sbjct 34679 AAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAA 34738 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||| |||||||| ||||||||||| ||||| ||| | | || || Sbjct 34739 GTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTT 34798 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAG--GACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || || || ||||| ||||||||| | ||||| |||||||||| | || ||||| | Sbjct 34799 GCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGATTACAATATTCAAAAAGAAT 34856 Query 206363 CTAC 206366 | || Sbjct 34857 CAAC 34860 >seq202 Length=70977 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || ||||| |||||| | ||||| || ||||| || | || | Sbjct 30625 AAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGATACCATAGACCAA 30684 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||||||||| |||||||| || || || ||| | | ||||| Sbjct 30685 GTTAAAGCAAA-GATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAACGCTTGATCTT 30743 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | || ||| | || || ||| | || ||||| || Sbjct 30744 CGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATTCAAAAAGAATC 30803 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 30804 CACTCTCCATCTCGT 30818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| || || | ||||| || ||||| || | || Sbjct 31308 CAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGATACCATAGACCA 31367 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||| |||||||| ||||||||| || ||||| ||| || || ||| | | |||| Sbjct 31368 AGTTAAAGCAAA-GATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAACGCTTGATCT 31426 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || ||||||||||| | ||||| | ||||| || | || ||||| | Sbjct 31427 TCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATATTCAAAAAGAAT 31486 Query 206363 CTACTCTTCACCTTGT 206378 ||||||| || || || Sbjct 31487 CTACTCTCCATCTCGT 31502 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230 || ||||| ||| || || || || ||||| || || | ||||| || || | || Sbjct 30385 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA--GTCCAATG 30442 Query 206231 ACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 | || | || ||| |||||||| ||||||||| || ||||||||| || || Sbjct 30443 ATACTATTGATCAAGTTAAAGCAAA-GATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 30501 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | | |||||||| || || || ||||||||||| | |||||| | ||||| || Sbjct 30502 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 30561 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | || ||||| || ||||| || || || Sbjct 30562 ATTCAAAAAGAATCAACTCTCCATCTCGT 30590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181658249781935