Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2141 120 3e-22 seq498 118 1e-21 seq202 111 1e-19 seq865 102 8e-17 seq6 89.7 5e-13 seq1702 86.0 6e-12 >seq2141 Length=12878 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||||||||||||||| |||||||| | ||| || ||| || Sbjct 5568 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 5509 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || ||||| || |||||||| || || |||||||| || | Sbjct 5508 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 5449 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | || || | ||||||| | ||| ||||| | || | ||||| Sbjct 5448 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 5389 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 5388 CCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||| || || | |||||| ||||| || ||||| || | Sbjct 5099 TTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAG 5040 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || ||||| || || ||||| || || |||||||| || ||||||| ||| | Sbjct 5039 CGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAA 4980 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||| |||| | || ||||| | || | || || || || || |||| Sbjct 4979 CTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTT 4920 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| || ||||||| Sbjct 4919 TAACGAAGATTTGCATGA 4902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||| || || | ||||| |||||| | || ||||| | Sbjct 5783 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 5724 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| || ||||||||||| || || |||||||| |||||| ||| | Sbjct 5723 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAA 5664 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 ||| || | ||||| | | || || || | || | ||| |||||||| || |||| Sbjct 5663 CCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTT 5604 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||||| ||||| Sbjct 5603 TTACAAAAATTTGCAT 5588 >seq498 Length=39471 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| |||| ||||||||||| ||||| ||| | | ||| |||||| Sbjct 34872 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 34813 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||| | | | |||| ||| |||||||| || || || ||||||||||| | Sbjct 34812 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 34753 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||| ||| | | || | |||||| | || ||||| | || | |||||| Sbjct 34752 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 34693 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||||| |||||| Sbjct 34692 CCAGTAAGTGTTTTAACAAAAATTTGCATG 34663 >seq202 Length=70977 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| || ||||| |||||| | |||||||| | Sbjct 30803 GATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCG 30744 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || ||||||||||| || || ||||||||||| ||| ||| ||| | Sbjct 30743 AAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACT 30684 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| ||||| ||||| Sbjct 30683 TGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTA 30624 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 30623 ACGAAAATTTGCAT 30610 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || |||||| |||||| | |||||||| | Sbjct 30577 TTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAG 30518 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 30517 CGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAA 30458 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | |||||| | | ||| ||||| | || | ||||| ||||| || || | Sbjct 30457 CTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCT 30398 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 30397 TGACGAATATTTGCAT 30382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 31033 TTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAG 30974 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || |||||||||||||| || ||||||||||| ||| || ||| | Sbjct 30973 CGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTA 30914 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 30913 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 30854 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 30853 TGACGAAAATTTGCAT 30838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || |||||||| || ||||| | ||||| |||||| | |||||||||| Sbjct 31261 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 31202 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || ||||||||||| || || ||||| ||||| ||| ||| ||| | Sbjct 31201 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAA 31142 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 31141 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCT 31082 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 31081 TGACGAAAATTTGCAT 31066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | |||||||| | Sbjct 31487 GATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCG 31428 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 31427 AAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACT 31368 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| || || || || Sbjct 31367 TGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTG 31308 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 31307 ACGAAAATTTGCAT 31294 >seq865 Length=39574 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 10158 TTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGG 10099 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | || || ||||| || || ||||||||||| || ||| || ||| | Sbjct 10098 CAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAA 10039 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 10038 CTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCT 9979 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 9978 TAACGAAAATTTGCAT 9963 >seq6 Length=229349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 || ||||| || || | ||||| |||||| || || ||||| | | | |||| | Sbjct 14004 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 14063 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 ||||||||||| ||||| |||||||| || ||||||||| ||| || || || | ||| Sbjct 14064 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 14123 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||| ||||| | || || ||||| ||||| | ||||| Sbjct 14124 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTT 14170 >seq1702 Length=19207 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || | |||||| ||||| || || ||||||| | || | ||||| || |||| Sbjct 12494 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 12553 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| | |||||| ||| |||||||||| || | ||| |||||||| || | | Sbjct 12554 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 12613 Query 147013 AACAATGAATTTCGCAGACC 147032 || ||||||||||| | ||| Sbjct 12614 AATAATGAATTTCGTACACC 12633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476547244734600