Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2141 136 4e-27 seq6 129 5e-25 seq498 107 2e-18 seq202 102 7e-17 >seq2141 Length=12878 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| |||||| | || || | ||||| || | | Sbjct 5360 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 5419 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| ||| ||| || ||||| ||||| || || |||||| Sbjct 5420 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 5479 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| |||||||| || |||| ||| | || |||||| Sbjct 5480 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 5539 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || ||||||| ||| Sbjct 5540 ATTCAAAAAGAGTCAACACTTCATTTGGTG 5569 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||| | ||||| ||| | ||||| | || || || || Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| |||||| ||||| |||||||| || || || ||| Sbjct 5192 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 5251 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||||| || |||| ||| | ||| |||||| Sbjct 5252 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 5311 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 5312 ATTCAAAAAGAATCCACTCTTCAT 5335 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 |||||| | ||||||| | || || ||||| | |||||||| | ||||| | |||| Sbjct 4893 AATTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAG 4952 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 | ||| | ||| ||||| || ||||| ||| ||||||| || ||||| || || | Sbjct 4953 TTGAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTC 5012 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGT 25341 | || || |||||| | || |||| || ||||||||||| ||||| | | | | | | Sbjct 5013 CCCCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTT 5072 Query 25342 CAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| || ||||||||||| || || ||||| |||| Sbjct 5073 CA--GATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGT 5112 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || |||| || | || |||||| | Sbjct 5588 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 5647 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || || || ||| |||||| |||||||||||||| || || |||||| Sbjct 5648 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 5707 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || || ||| | ||||||| | | | | | ||||| || Sbjct 5708 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 5767 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||||||||| || |||| Sbjct 5768 ATCCAAAAAGAATCAACTCTTCA 5790 >seq6 Length=229349 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 25181 GTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACT 25240 |||| || ||||||||||| |||||| | | || || |||||||| | ||||| Sbjct 14179 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 14120 Query 25241 ATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGA 25300 || || ||| ||||| ||||||||| || ||||| |||||||| || ||||| |||||| Sbjct 14119 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 14060 Query 25301 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAA 25360 | |||| | || || ||||| ||||||| | | | | || ||||||||||| Sbjct 14059 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 14000 Query 25361 AAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| | |||||||| |||||||| || || || Sbjct 13999 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 13959 >seq498 Length=39471 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| |||||| | || || ||| | || || | ||||| ||| Sbjct 34661 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 34720 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||||| ||||| |||| ||| |||||||| |||||||| || || || || ||| Sbjct 34721 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 34780 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATT 25349 || ||| | | || | | || ||||| | ||||||| | | | || ||||| Sbjct 34781 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CGATT 34838 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 ||||||||||||||||||| || Sbjct 34839 ACAATATTCAAAAAGAATCAAC 34860 >seq202 Length=70977 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | ||||| | ||||| || || Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| |||||||| ||||| || || ||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 30729 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| | || | Sbjct 30730 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 30787 Query 25353 ATATTCAAAAAGAATCCAC 25371 | ||||||||||||||||| Sbjct 30788 ACATTCAAAAAGAATCCAC 30806 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 30838 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 30897 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 30898 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 30957 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| |||| | Sbjct 30958 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAG--ATTATA 31015 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 31016 ATATTCAAAAAGAATCAAC 31034 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | |||||||| |||| Sbjct 30382 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 30441 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || ||||| ||| ||| ||| ||||| || || || || || ||||| Sbjct 30442 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 30501 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | ||||| |||| | Sbjct 30502 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 30559 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 30560 ATATTCAAAAAGAATCAAC 30578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || || Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || |||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 31413 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || || |||||| | ||||||| | | | | | ||||| ||| Sbjct 31414 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 31473 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 31474 ATTCAAAAAGAATCTAC 31490 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 31066 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 31125 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || ||||| Sbjct 31126 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 31185 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||| |||||| | ||||||| | | | | || || ||| Sbjct 31186 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 31245 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 31246 ATTCAAAAGGAATCAAC 31262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445034673895200