Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1702 414 1e-110 seq717 188 1e-42 seq114 102 1e-16 >seq1702 Length=19207 Score = 414 bits (458), Expect = 1e-110 Identities = 694/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA-CACATCAATG 69574 ||| |||||||| ||||||||||| || |||||| |||| ||| || || || Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | ||| | ||||||||| ||||| | || |||||| || || Sbjct 13578 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 13636 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | ||| | | | | |||||| ||||| ||||||||||| | ||| | ||| || | Sbjct 13637 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 13696 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| ||||||| Sbjct 13697 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 13756 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | || || | ||||| || || |||||||| || | | ||| |||||||| ||||| | Sbjct 13757 CTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTG 13816 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | |||||||||||||| ||||||| |||| | || ||||| ||| ||| | || Sbjct 13817 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 13876 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | ||||| || | || || |||||| || ||||| || |||| Sbjct 13877 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 13936 Query 69935 CTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TAGT 69992 |||| ||||||| |||| ||||| ||||||||| || || | |||| | | || || Sbjct 13937 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGA-GGTCTAGGTGT 13994 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || |||||||| || || |||||||||||||| || | ||||| || | ||||||||| Sbjct 13995 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 14054 Query 70053 TGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||||| | ||| ||||| | | | ||||| || | ||| || ||||| | || Sbjct 14055 AGTTTCAATAGCAGCTTCGATATCATCTCCG-TGAATCCCAACCGCTACGCGCATAAGCA 14113 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 |||| || || || || | ||| | |||| || || || ||| |||| |||| Sbjct 14114 TATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAG 14173 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| |||||||| || ||| | | | ||| || ||||| || |||||| |||| Sbjct 14174 TTTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTT 14233 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTT 70288 | ||| || || | || |||| || ||| | || || || | | |||| Sbjct 14234 TTTCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTT 14290 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || |||| ||||| | ||| || | | |||||| | |||| ||| | ||||| Sbjct 14291 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 14350 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | ||||| || || | ||| || | || || | || || || | |||||||| |||| Sbjct 14351 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 14410 Query 70409 GTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 ||| || || || || || || |||| ||||| || |||||||||| | ||| || Sbjct 14411 GTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 14469 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| | ||| ||| || || Sbjct 14470 ACACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 12491 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 12550 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | |||||||| |||| ||||| | ||| |||||||| ||||| ||||| Sbjct 12551 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 12610 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | |||||| ||||| | ||||||| | ||||| | ||| | ||||||||| Sbjct 12611 AGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCC 12670 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 || | ||||| || |||||||||| | ||||||||||| ||| || || | | Sbjct 12671 CATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGGT 12730 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| | ||||| || || | || | ||||||||| ||| |||||| Sbjct 12731 GATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAAT 12790 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| | ||| ||||| || || || | |||||| || || | ||| || | ||| Sbjct 12791 GCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGAATCA 12850 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 ||| || | | | | || || | |||||||||||| Sbjct 12851 AATTGAATACGCATAGCAAGGAAAGTATCTGCCAATCC 12888 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||| || ||||| | || | ||||| || || || |||| | | | Sbjct 13186 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 13245 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 13246 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 13305 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||| | || ||||| || ||| | || ||||| ||||| ||||| || Sbjct 13306 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 13365 Query 69435 TTCGATAATAGATTTCCAAAC 69455 ||| | ||| | | |||| || Sbjct 13366 TTCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 188 bits (208), Expect = 1e-42 Identities = 208/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| Sbjct 4438 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4379 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||||| || || || ||| | |||| | ||||||||||| || || ||||| Sbjct 4378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4319 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA--- 40084 |||||||| || ||||| || || |||||| ||||||| || | | |||| Sbjct 4318 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATAC 4259 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||||| ||||| || || | || ||||| ||| | |||||||| || || || Sbjct 4258 TCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCG 4199 Query 40145 GCCTTTTTGTACATGTTCCATATAT-CACGATATT 40178 |||||||||||||| | ||| || | ||| ||||| Sbjct 4198 GCCTTTTTGTACATTTGCCAGATCTACACAATATT 4164 Score = 141 bits (156), Expect = 1e-28 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||| || || |||||||| || || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||||| |||||||| ||||| || |||||| |||| || Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 4996 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCACAAT 39491 | | | | |||||||| || |||||||| || ||| ||||||| | ||| | | Sbjct 4995 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 4937 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || | |||||||||| || || |||| ||| |||| ||| || || | Sbjct 4936 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 4877 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAA-ATGTTTAA 39608 | || | ||| || | | ||| | | | | || || |||| || ||| | | Sbjct 4876 CTTCCGCTATAATAGCTTCTAC-AGTTTTTG--TTGGAGGTCGTGCACGAAGATGAGTGA 4820 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | || || || |||||||| | || ||||||| | ||||| |||||| |||| Sbjct 4819 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4760 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||| ||||| | || | || || | |||||| || | || |||| ||||| Sbjct 4759 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4700 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || ||||| || || ||||| || ||||| Sbjct 4699 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4663 >seq114 Length=70618 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| | | | ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||| || || ||| ||| ||||| || |||| || || | | ||| || |||||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||||| || ||||| | ||||||||| || | |||||||||||||| || || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 70120 GGTCGTTCTAC 70130 |||| ||| || Sbjct 58077 GGTCTTTCAAC 58067 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 68713 ACTATTTGAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGTATATGGT 68769 |||| ||||||||||||| ||| || ||| || |||||||| || || |||||| Sbjct 59952 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 59896 Query 68770 TCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACC 68829 || | ||||||| ||||| ||||| ||| || |||||||| ||||| ||||| | | Sbjct 59895 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 59836 Query 68830 AATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAA 68889 || ||| ||||| | |||| | |||| || ||||| | | | ||| ||||| Sbjct 59835 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 59776 Query 68890 AGATCAGATGGT 68901 |||| || ||| Sbjct 59775 CGATCTGAAGGT 59764 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 |||||||||||||| || ||||||||||||||| ||||||||||| ||| || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 69242 | |||||| | ||| | || |||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 69243 -TCGTCCATCT----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | || || | ||||||| || | || | || |||| ||||||||| ||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 69358 CCCAGATTTTGCTGATTA 69375 || ||||| | |||||| Sbjct 59135 CCAAGATTCTTTTGATTA 59118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816625425400