Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1702 120 3e-22 seq498 120 3e-22 seq2141 113 4e-20 seq202 89.7 4e-13 >seq1702 Length=19207 Score = 120 bits (132), Expect = 3e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||||| || ||||| || || |||| ||||||||||||||| | ||| Sbjct 12494 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 12553 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 ||||| |||| || ||| |||||||| | |||| ||| || ||||| ||| | Sbjct 12554 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 12613 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 |||| ||||| || | ||| || | |||||| | ||||| || |||||||||| Sbjct 12614 AATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCCCAT 12673 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTT 130983 | | ||||| | ||| ||||||||||| |||||| |||||||| Sbjct 12674 AAATCAGTAGGCTCAACA---TTCCACATATCGTATTGTAAAATGCCTTT 12720 >seq498 Length=39471 Score = 120 bits (132), Expect = 3e-22 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| || || | |||||| ||||| || || ||||||||||||||||| ||| Sbjct 34891 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 34832 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | ||||| | ||||||||| || | || | ||| ||||||||||| || Sbjct 34831 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 34772 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| || || | ||| | | || | || || | |||||| Sbjct 34771 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 34712 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||| ||| || | ||| || || || ||||| ||||| |||||||| | | ||||| Sbjct 34711 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT-GTTTAAAAAAA 34653 Query 27260 TTTATT 27265 |||||| Sbjct 34652 TTTATT 34647 >seq2141 Length=12878 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||||||||||||||| | | | || | || || Sbjct 5568 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 5509 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| || ||||| || || | ||| ||||| || Sbjct 5508 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 5449 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | || | || || | | |||||||| | ||| || | ||| Sbjct 5448 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 5389 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||| ||||||||| Sbjct 5388 CCAGTTAGAGTTTTAACAAAAATTTGCATA 5359 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||||||| | | | || | || || || |||||||| Sbjct 5328 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 5269 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| || || || || || | |||||| ||||| || ||| |||| Sbjct 5268 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 5209 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || | || || | || || || || | || || | |||||| || || || Sbjct 5208 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 5149 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || |||||||||||| || Sbjct 5148 TTTACGAAGATTTGCATACCT 5128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||| | ||| | || || ||||||||||| || || || Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 5071 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || ||||| || ||| |||| ||||| || || || || || Sbjct 5070 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 5011 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | || | |||||| | | ||||||| Sbjct 5010 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 4951 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | || || || || ||||| || ||||||||||| || ||| || Sbjct 4950 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTAATTAT 4891 Query 27261 TTATTAAA 27268 | |||||| Sbjct 4890 TAATTAAA 4883 >seq202 Length=70977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || ||||||||||| || ||||| || | || Sbjct 30827 AAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGA 30768 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 30767 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCT 30708 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 30707 TTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTG 30648 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || ||||| ||||| || || ||||||||| Sbjct 30647 ATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 30609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || |||||||||||||| || || || | || Sbjct 31055 AAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGA 30996 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 30995 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCT 30936 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| |||| | |||| || || | || || ||||| ||||| Sbjct 30935 TTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTA 30876 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || || || || || || ||||||||| Sbjct 30875 ATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 30837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCG 27088 || || | ||| | ||| | || || || ||||||||||| ||||| | | | || | Sbjct 31283 AAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGG 31224 Query 27089 CTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTC 27148 | | ||||| | |||||||||||| | || | || |||||||| || || | ||| || Sbjct 31223 C-CATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTC 31165 Query 27149 TTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGT 27208 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 31164 CTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGT 31105 Query 27209 TATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || ||||| || || || ||||||||| Sbjct 31104 AATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCATA 31065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424878804637320