Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq148 96.9 3e-15 >seq148 Length=94477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 111729 ATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGG-CTCCAAACCAGTGATGT 111787 ||| | ||| | ||| || || ||| || ||||| | ||| || ||| || || | | Sbjct 50700 ATATATATGAGTATCACCCATGGTATGAATAAATTCACCAGGACTACAACCC-GTTACAT 50642 Query 111788 GTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCA 111847 | |||||||| | || | || | || || |||||||||||||| ||||| || || | Sbjct 50641 GAGCAATCATATGAGTTAATATAGCATAGCTTGCAATGTTAAATGGTACACCAAGTCCAA 50582 Query 111848 TATCTCCCGATCTTTGATATAGCTGACATGATA---GTTTATTTTGTGACACATAAAATT 111904 ||| | ||||||||||| || |||| |||| ||| | | ||| ||||| |||| Sbjct 50581 CATCACATGATCTTTGATAAAGAAGACACGATAATCTTTTCGTATTTGATACATAGAATT 50522 Query 111905 GACAAAGTACATGACAAGGAGGCAATGCCAT 111935 | |||| | |||||| || || |||||||| Sbjct 50521 GGCAAAACATATGACATGGTGGTAATGCCAT 50491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391894320654805